Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq45003 82.4 1e-10 >seq45003 Length=135597 Score = 82.4 bits (90), Expect = 1e-10 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCT-AGTCTCTTCTCCAGAAGGGACGAC 14230 ||||| ||| |||| || || | |||||||||||| ||| |||||||||||||| || || Sbjct 124396 GGTAACCCTACATGGTGCACATGACATGTGTATCTCAGT-TCTTCTCCAGAAGGCACCAC 124454 Query 14231 GATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGT 14290 | |||| |||| || || || || ||||| || || || | || ||| |||| | Sbjct 124455 CACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCCGGCCTGGTGTCTGGTAGCTCCAT 124514 Query 14291 ATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAA 14350 || | | || | | || || | | ||| || | | || ||||| ||||| || Sbjct 124515 GTCCTCGGTGTGGTTGTTCCCATCCCTCTGCCAGGTCAGGGTAATGTCAGCTGGATAGAA 124574 Query 14351 ACCCAAAGCCCAGCACC 14367 |||| |||||||||| Sbjct 124575 GCCCAGGGCCCAGCACC 124591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 624881135900840