Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq7634 105 8e-18 seq12971 87.8 2e-12 >seq7634 Length=216425 Score = 105 bits (116), Expect = 8e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | ||||||||||| ||||| | || || || |||||||||||||| Sbjct 209354 CATGACTCCCATCCTCTGATATTCTCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 209295 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| ||||||||||| || ||||||||||| Sbjct 209294 TAGTGAAATATTTTCCATGAAGTCAAATGGATT 209262 >seq12971 Length=450841 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 37563 AAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAA 37622 ||||||||||| ||||| |||||||| |||||||||||||| ||||||| ||||||| Sbjct 8184 AAGTTTTCATTGACTATGCCATCACTCGCTGCAAAGAAAGCCAGAACATGAGATATAAAA 8125 Query 37623 TGTCTTTCATC 37633 ||||| ||||| Sbjct 8124 TGTCTCTCATC 8114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588173329269160