Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq9385 118 8e-22 >seq9385 Length=230659 Score = 118 bits (130), Expect = 8e-22 Identities = 151/207 (73%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||||||||| ||||| || ||||| || | | ||| | |||| |||| || Sbjct 28129 ATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAGCTG 28188 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| ||||| | ||| | ||| || ||||| ||||| ||||| || || || Sbjct 28189 CTTACCAGCAAAGATCAACCTCTGCTCATCAGGAGGAATTCCTTC-TTATCCTGGATGTT 28247 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || |||||| |||||| || | ||| || | || ||| || || || || Sbjct 28248 GGCCTTTCCAGTTTCTATAGTGTCCGAGGGTTCAACCTGGAGCATGATGGTCTTCCCTGT 28307 Query 101446 TAAAGTTTTTACAAATATCTGCATGGT 101472 | || || ||||| |||||||| || Sbjct 28308 AAGGGTCTTCACAAAAATCTGCATCGT 28334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393575591717553