Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7634 96.9 6e-15 seq1495 93.3 8e-14 >seq7634 Length=216425 Score = 96.9 bits (106), Expect = 6e-15 Identities = 100/126 (79%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || ||||||||||| ||||| || ||||| ||| ||||| ||||| | || |||||| Sbjct 206345 GTGGCCTTTGCTGCGGTGGAAGGGATCTTCTTCTCTGGTTCTTTTGCATCGATATTCTGG 206404 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGG 26002 |||||| | | |||||| ||||| || || ||| |||||||| ||||| || ||||| | Sbjct 206405 CTCAAG-AAACGGGGACTGATGCCAGGCCT-TACGTTTTCCAATGAGCTTATTAGCAGAG 206462 Query 26003 ACGAGG 26008 |||||| Sbjct 206463 ACGAGG 206468 >seq1495 Length=642193 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| |||||||||||||| || || || || ||| || || ||||| || || |||| Sbjct 168176 TGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCTGGATCATTTGCTGCTATATTCT 168235 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || |||||| || ||| |||||| || || ||||||||||||| Sbjct 168236 GGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACCTTTTCAAATGAACTCATCAGCAGGG 168295 Query 26003 ACGA 26006 | || Sbjct 168296 ATGA 168299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922347193917760