Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3787 104 2e-16 seq38941 93.3 3e-13 seq4911 93.3 3e-13 seq20595 89.7 3e-12 seq56394 87.8 1e-11 >seq3787 Length=754536 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || ||||| || || ||||| ||||| || || ||||| ||||||| Sbjct 58274 ATGCTGTGGTCACAGTGCCAGCTTACTTCAATGACTCTCAGCGACAGGCAACAAAAGATG 58215 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| || || ||||| | || ||||| ||||||||||| || || || Sbjct 58214 CTGGAACTATTGCTGGCCTCAATGTACTTCGAATTATCAATGAACCAACGGCTGCTGCTA 58155 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| | |||||||| Sbjct 58154 TTGCGTATGGCTTAGATAAGAA 58133 >seq38941 Length=222328 Score = 93.3 bits (102), Expect = 3e-13 Identities = 225/333 (68%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGT-TCT 475665 |||||||| | ||| | || || |||||| || | || ||||| || |||| ||| Sbjct 69265 TTTGAAGAGCTGTGTGCAGACCTATTTAGAGGCACGCTGGAGCCCGTGGAG-AAGTCTCT 69207 Query 475666 CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 | ||| | || | ||||| | || |||| || |||||||| ||||| || || || Sbjct 69206 TCGGGATGCCAAGATGGACAAGGCTAAAATCCACGACATTGTTCTAGTAGGGGGCTCGAC 69147 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATG 475784 | || ||||| | | || ||||| || | || |||||||| | | || Sbjct 69146 GCGCATCCCAAAGGTGCAAAAACTGCTT-CAGGACTACTTTAATGGACGGGATCTCAACA 69088 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTAT 475844 | ||| | ||||| ||||| || || || || |||||||| ||||| |||||||||||| Sbjct 69087 AGAGTATCAATCCGGATGAGGCAGTAGCCTACGGAGCTGCAGTCCAGGCAGCTATTTTAA 69028 Query 475845 CAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTT-GACGTAACTCCACTTTCA 475903 ||| | | || ||| || | || ||| ||||| |||||| |||| || || Sbjct 69027 TGGGTGACAAATCTGAAAAAGTACAGGAT-TTGCTTTTGTTGGACGTAGCTCCCCTGTCT 68969 Query 475904 TTAGGTCTTGAAACAGTTGGAGGGATTATGACT 475936 |||| | || |||| ||| || | |||||| Sbjct 68968 CTAGGATTGGAGACAGCTGGGGGTGTGATGACT 68936 >seq4911 Length=248699 Score = 93.3 bits (102), Expect = 3e-13 Identities = 191/283 (67%), Gaps = 1/283 (0%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 || ||||| |||| | |||| | || || || ||| | ||| | | | | || ||| Sbjct 209952 GACTTGCAGTTGGCACTGATCTTGGCACCACCTACTCCTATGTGGGTATCTTCCAGCATG 209893 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | || | |||||||||| ||||||||| ||||| || | ||| |||||| ||| Sbjct 209892 GAAAGTTGGAAATAATTGACAATGACCAGGGTAACCTCACCATGCCAAGCTATGTTGCTT 209833 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 | ||||| || ||| | ||||| ||||| || || ||| | |||| || || Sbjct 209832 TCACTGACACAGAATGATTAATTGGGGATGCAGCCAAGACTCAGGTTGCAATGAACCCCA 209773 Query 474504 TT-AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC 474562 || | |||||||||| ||| ||||||| ||| ||||||||| | ||| Sbjct 209772 AGCAACAGATTTTTTGATGCCAAACATCTGATTGGATGTAGGTTTGATGATGCTGTTGTT 209713 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTG 474605 |||||||||||| || ||||| || | || | | |||| || Sbjct 209712 CAATCTGATATGAAGCACTGGCCCTTCATGGCGGTGAATGATG 209670 >seq20595 Length=81188 Score = 89.7 bits (98), Expect = 3e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 476035 AGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTAT 476094 ||||||| || | || ||||| ||| | || ||||| ||| |||| || || Sbjct 49948 AGGTGAACGACCCCTAACAAAAGACAATCATCTTCTGGGAACATTTGATCTGACTGGAAT 50007 Query 476095 TCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGG 476154 ||||||||||||| | |||||||| || |||||||| || ||||| || |||| ||||| Sbjct 50008 TCCTCCTGCTCCCCGTGGAGTTCCCCAGATTGAAGTCACCTTTGAGATAGATGTTAATGG 50067 Query 476155 TATTCTT 476161 ||||||| Sbjct 50068 TATTCTT 50074 >seq56394 Length=146557 Score = 87.8 bits (96), Expect = 1e-11 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| |||||||| || || | |||||||||||||||||||||||||| Sbjct 141257 ATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGATCAGGAGGAATTCCTTCCTT 141198 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 | || |||| | || ||| ||| |||||||| Sbjct 141197 AACCTGGCTCTTGGGCTTTACATTTTCTATAGTATC 141162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3244173996870092