Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1723 239 5e-58 seq13838 122 1e-22 seq48367 116 4e-21 >seq1723 Length=1657771 Score = 239 bits (264), Expect = 5e-58 Identities = 650/986 (66%), Gaps = 13/986 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||||||||| |||| ||| |||| ||| || ||| || || ||| || ||||| || Sbjct 464609 CAGATGTTCATCCAAACACTGGATGGCAAAGGGGTCGACATCCATGTCAAACTTATTGGC 464668 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || | |||||| || || || |||||| || ||| || | || |||||||| || Sbjct 464669 AAAAAAATGGTGT---TTGTGCAGCATCCAGCTCAAGTCACCAGCTCCAAACACGCACAC 464725 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| || |||| || || || | || || || | || |||||||| Sbjct 464726 GGAGCGCACGTGGGTACCACTGCATGGTGGATAAGGCGCGCCGTTGGAAACATCACCTTC 464785 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | ||||||||||||| |||||||| || | || | |||||| || ||| || || | Sbjct 464786 GAAGTACTGCCACTTGACAAACCTAGCAACAGCGTTCATGTCAGACAAGTCATACTTCTG 464845 Query 160292 -CATCAGGGGAACGGCA-CCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGT 160349 | | ||||| || | || || || ||| || | || | ||||||||| ||| Sbjct 464846 GCTTGAGGGG--CGAGAGCCAGGGACTTTGGGGATCCTTTGGATGGTGGCCCAGAGGAAC 464903 Query 160350 TCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT--TAACCTGTCCC 160407 || || ||||| || ||||||| | ||| |||||||||| | || | | | | || Sbjct 464904 TCATCTGGGCTATATGTGTCCTGTGCCCACTCCATGAACTTTTGAATATTTTCATTTTCC 464963 Query 160408 GCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCG 160467 || || | || || || | || || ||||| |||||||| || || | | Sbjct 464964 --AGCACATAGCCTACATATTCCCTACTGACCACGAAGTAGGCGCTGCCTGAAAAGAGAG 465021 Query 160468 GTATGGGTATAGGCGGCGTGT-CTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACC 160526 | | | || ||| ||| ||||| | || ||||| | || | || | | Sbjct 465022 GAGTTTTGAGCGGAGGC-TGTGCTTTGCCTACTCCAGTGTTTGTCAGCTTCCCATCAATG 465080 Query 160527 AGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGA 160586 | ||| || || ||||| || | ||||| | ||||| || || || || Sbjct 465081 ATGACGTATCTTTTTTTCCATCTCTCTTCCTTGTTGGAAGGCATCTTCTCAGTTTCCAGG 465140 Query 160587 CTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGA 160646 |||| | || || || || |||| | |||| || || | ||| || || | || Sbjct 465141 TTGTTCTCCCCTATGAAGGACTTGAGCTTCCTGACAATTTCCAAGTTGGTTTTAATAGGG 465200 Query 160647 AAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCC 160706 || || |||| || | || |||| ||||||||| | || |||| || ||||||| Sbjct 465201 AAATCCATACCACAAAGATTGATCAAGTACTTCCAGCTTGCACTCATTCTGTACAGGTCC 465260 Query 160707 CTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGT 160766 ||||||| || | || ||||| || || |||||||| || || || || |||| | Sbjct 465261 TTCATGCAGTTGAGGTCAGCCTGAACCCGACTCCAGGATGCATAAACAACACTCTCCAAC 465320 Query 160767 TTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAAC 160826 |||||||| ||||| ||||| || || || | || ||| |||||| || || Sbjct 465321 CGGCTGGCCACGAAGACATTATCAAAGCAGGATGCAATGCCCCGCACCGCGTTTAAAAAG 465380 Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 | || || ||| ||||||||| | ||| || | ||||||||| |||||||| Sbjct 465381 GATTCCTCTGCTTTTTTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATATAGATGGCT 465440 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || || | ||| || | ||| || ||||||||||| | ||| || || || || || ||| Sbjct 465441 CTCAGGAGCCTGTCAAGCATTTCAATCTTATGATGAACCACTATGGAATATGCAATTGGA 465500 Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006 || | ||| || | | |||| | | | || || || ||| |||| ||| | Sbjct 465501 AAGCCTACCTCTTCTTTAGTAAGGGGCTCCACAATATATTTGCGTGTCCTGATGAAAGAG 465560 Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032 ||||||| || |||||||| ||||| Sbjct 465561 GCACAATCACGGGTCATGTTTATATA 465586 >seq13838 Length=123503 Score = 122 bits (134), Expect = 1e-22 Identities = 219/320 (68%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | | || || | ||| | || || |||||||||||||| ||| Sbjct 16913 TAGAGGGTAAGGCAGGCTGTCCCCGAGACCTTCCTAGAGCCAAACGTGTTGAAGAGACAC 16854 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| ||||||| || ||||||| || || ||||| || || | ||||||| | ||| Sbjct 16853 ATGTAGCAGCCCTCATCCTCCAGTGTTGTGTTCCAGAAGGTGATGCTTGAGTTCCAGAGT 16794 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| | || | ||| | | ||||| || | ||| || | ||||||||| ||| | Sbjct 16793 CCCAGTTCGGTGACGTTTATTCTGTCTTTGTAGGCAGGCTGGATTACAACGCCATGGGTT 16734 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||| | ||| ||||||| || ||||| || || | |||||||| || || ||| Sbjct 16733 TTGCTGTAAGTGACCATGTTTTCTGGGCTCACTGCTTTCTTTTTCTGCCATGTCACAATC 16674 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 | || | || | ||| ||||| | || || || | |||| |||||| | | Sbjct 16673 AAGGGTTCCTGGGATGTTTTCAGAGAACACCGCAAGGATGCGGTTGTGTGCAGCAGCTTT 16614 Query 168450 CGCTCATCTTGAGTTACGAC 168469 | ||||| || || || || Sbjct 16613 CTTTCATCCTGGGTCACCAC 16594 >seq48367 Length=227479 Score = 116 bits (128), Expect = 4e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 176209 TGTTGTTTGTATCTAGTATATGTAGATATTTTACTAGGTCACGTGGCGAGTCATAATCAT 176268 |||||||| | || | | | ||||||||| | | |||| ||| |||| | |||| | Sbjct 206575 TGTTGTTTTTGTCAACTTCCTTCAGATATTTTGCCAACTCACTTGGAGAGTTAAAATCTT 206516 Query 176269 TAACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTA 176328 ||||| || |||| | | |||||| || || ||||| |||| || || ||||| | Sbjct 206515 CCACATGAATGAATGAATCAGCTGGAATATAATTCTCATAGTTTTCCCTAGATGGTCCCA 206456 Query 176329 AAACTATTGGTACGGTACGTGCTAATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAG 176388 || | ||||| | || || || |||| ||||| |||||||| |||||| || Sbjct 206455 GGACAACAGGTACTGAACCAGCCAAAAATGCATTGTAGAGCTTTTCTGTGATGTAATCTT 206396 Query 176389 TGTGAATTGAGTTTTCAAAAGCTAAATAGAACTTACA 176425 ||||||||||||||||||||| | ||| || ||||| Sbjct 206395 TGTGAATTGAGTTTTCAAAAGAAAGATAAAATTTACA 206359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573181342454040