Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq9385 84.2 4e-11 >seq9385 Length=230659 Score = 84.2 bits (92), Expect = 4e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| || || | |||| |||| || ||||||||||||| Sbjct 28144 CTTTTGA-ATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAGCTGCTTACCAGCAAAGA 28202 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | || ||||| | |||||| || |||||||| ||||| || || || ||| || | Sbjct 28203 TCAACCTCTGCTCATCAGGAGGAATTCCTTC-TTATCCTGGATGTTGGCCTTTCCAGTTT 28261 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||||| || || | ||| || | || | ||||| || || || | || || | || Sbjct 28262 CTATAGTGTCCGAGGGTTCAACCTGGAGCATGATGGTCTTCCCTGTAAGGGTCTTCACAA 28321 Query 192527 ATATCTGCAT 192536 | |||||||| Sbjct 28322 AAATCTGCAT 28331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 977421035664150