Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8215 143 3e-28 seq25246 125 9e-23 >seq8215 Length=345707 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | |||||||||||| ||||| | |||||| | || Sbjct 148466 GCTTGGCCAGCTCCCCCGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGA 148407 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 148406 TGGTCGAGCGTTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGA 148347 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| ||| || | Sbjct 148346 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGAT 148287 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 148286 GCACCTGCTTCAGCACCTTGTA 148265 >seq25246 Length=185022 Score = 125 bits (138), Expect = 9e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| ||| ||| | |||||||| || ||||||||||| |||| ||| || Sbjct 4834 GCCAGTTCTCCGGGCAGTAGAAGGCGCACCGCCGTCTGGATCTCCCGCGATGTGATTGTA 4775 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| | |||||||| || |||||| | | ||||| || | ||||| Sbjct 4774 GACCGCTTGTTGTAATGCGCCAGGCGAGAAGCCTCGTTTGCTATGCGCTCAAAGATGTCA 4715 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 |||||||| |||||||||| ||| | |||| ||||| ||| ||| ||||||||| Sbjct 4714 TTGACAAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATTCCCGTGTCCGGGTGCACC 4655 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||| ||||| Sbjct 4654 TGCTTCAGCACTTTGTA 4638 Score = 122 bits (134), Expect = 1e-21 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| ||| ||| ||| | ||| |||||||| ||||||||||| || | ||| || Sbjct 59040 GCCAATTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTC 58981 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| | |||||||||||| ||||| ||||||| |||| |||||| Sbjct 58980 GAGCGCTTGTTGTAATGCGCCAGACGGGAAGCCTCACCTGCGATGCGCTCGAAGATGTCG 58921 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || || || ||||||| ||| | ||| ||||||||| ||| ||||| || Sbjct 58920 TTCACGAAGGAATTCATGATTCCCATGGCCTTAGAGGAGATGCCGGTGTCAGGGTGGACT 58861 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||||||||| Sbjct 58860 TGCTTCAGCACCTTGTA 58844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6061213423517393