Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02]
559,629 sequences; 3,758,143,898 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq9385 120 3e-22
seq4803 84.2 2e-11
>seq9385
Length=230659
Score = 120 bits (132), Expect = 3e-22
Identities = 153/207 (74%), Gaps = 3/207 (1%)
Strand=Plus/Minus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
||||||||||| ||| | || || || || || || || || | |||| | || ||| ||
Sbjct 28334 ACGATGCAGATTTTTGTGAAGACCCTTACAGGGAAGACCATCATGCTCCAGGTTGAACCC 28275
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| ||||||| | ||| || ||||| || || |||||||| ||||| |||
Sbjct 28274 TCGGACACTATAGAAACTGGAAAGGCCAACATCCAGGATAA-GAAGGAATTCCTCCTGAT 28216
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTA 24879
| || | ||||||||||| || || |||||||| || | | | || |||| || ||
Sbjct 28215 GAGCAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGA-TGGCCATACTTTGTCTGACTA 28157
Query 24880 TAACATTCAAAAGGAATCGACACTACA 24906
||||||||||||||||| || || ||
Sbjct 28156 CAACATTCAAAAGGAATCTACCCTTCA 28130
>seq4803
Length=331686
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567
||||||||||| || | |||||||| ||| ||| ||||| ||||| |||||||||
Sbjct 153631 ACCTGAAATTCTCCTGACAATACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATG 153572
Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCAT 138611
|| || || || |||||||||||||| || | || || |||||
Sbjct 153571 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCAT 153528
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 446750403200120
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |