Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq8215 188 1e-41 seq25246 178 2e-38 seq12971 96.9 5e-14 >seq8215 Length=345707 Score = 188 bits (208), Expect = 1e-41 Identities = 188/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || || ||| ||||||| || || ||| Sbjct 148505 TGTACTTGGTGACTGCCTTGGTGCCCTCGGACACAGCATGCTTGGCCAGCTCCCCCGGCA 148446 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| | |||||||| ||| || ||| ||||| Sbjct 148445 GCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGATGGTCGAGCGTTTGTTGTAAT 148386 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||||| || ||||||| |||| ||||||||||| || ||||||| Sbjct 148385 GCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 148326 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||| || ||||||||||| |||||||||| Sbjct 148325 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGATGCACCTGCTTCAGCACCTTGT 148266 Query 1485710 AAAC 1485713 | || Sbjct 148265 ACAC 148262 >seq25246 Length=185022 Score = 178 bits (196), Expect = 2e-38 Identities = 193/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| | |||||||| ||| ||| Sbjct 4878 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTAGCCAGTTCTCCGGGCA 4819 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||| || ||||||||||| || | ||| || |||||||| Sbjct 4818 GTAGAAGGCGCACCGCCGTCTGGATCTCCCGCGATGTGATTGTAGACCGCTTGTTGTAAT 4759 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | | ||||| || | ||||| |||||||| ||||||| Sbjct 4758 GCGCCAGGCGAGAAGCCTCGTTTGCTATGCGCTCAAAGATGTCATTGACAAAGGAGTTCA 4699 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||| ||| ||| |||||||||||||| ||||| |||| Sbjct 4698 TGATGCCCATGGCCTTGGACGAGATTCCCGTGTCCGGGTGCACCTGCTTCAGCACTTTGT 4639 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 4638 ACACATAGATGGAGTA 4623 Score = 165 bits (182), Expect = 1e-34 Identities = 183/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| |||||||| || ||||| | |||| ||| ||| ||| Sbjct 59084 TGTACTTGGTGACGGCCTTGGTGCCCTCTGACACAGCGTGTTTAGCCAATTCCCCGGGCA 59025 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| |||| ||| || ||||||||| Sbjct 59024 GCAGCAGACGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAAT 58965 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| ||| ||||| ||||||| |||| |||||||| || || || |||| Sbjct 58964 GCGCCAGACGGGAAGCCTCACCTGCGATGCGCTCGAAGATGTCGTTCACGAAGGAATTCA 58905 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||||||||| ||| ||||| || ||||| |||||||||| Sbjct 58904 TGATTCCCATGGCCTTAGAGGAGATGCCGGTGTCAGGGTGGACTTGCTTCAGCACCTTGT 58845 Query 1485710 AAAC 1485713 | || Sbjct 58844 ACAC 58841 >seq12971 Length=450841 Score = 96.9 bits (106), Expect = 5e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 ||||||||||| ||||||||||||||||| || || |||||||||| ||| || ||| Sbjct 7425 ACCTCCTCGGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGG 7366 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || ||||||||| | ||| ||||| |||||| || | |||| |||||| Sbjct 7365 TATTCGATGGGGAAGACAACGAAGCGGCGGGGGTTGTCTCTGAGCAACGGCTC 7313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7856716110802131