Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq9385 89.7 4e-13 >seq9385 Length=230659 Score = 89.7 bits (98), Expect = 4e-13 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || ||||| ||||||||||| || || | | || | ||| || || || Sbjct 28129 ATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAGCTG 28188 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 || |||||| | ||||| || |||| ||| || ||||| || || || || || | || Sbjct 28189 CTTACCAGCAAAGATCAACCTCTGCTCATCAGGAGGAATTCCTTC-TTATCCTGGATGTT 28247 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||||||||| |||||| || |||| || | || | || || || || || Sbjct 28248 GGCCTTTCCAGTTTCTATAGTGTCCGAGGGTTCAACCTGGAGCATGATGGTCTTCCCTGT 28307 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | ||| || ||||| |||||||| Sbjct 28308 AAGGGTCTTCACAAAAATCTGCAT 28331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 382591820752689