Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3787 104 2e-16 seq537433 98.7 7e-15 seq41325 91.5 1e-12 seq20595 89.7 4e-12 seq12905 87.8 1e-11 seq30574 86.0 5e-11 >seq3787 Length=754536 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| | |||||||||| ||||||||| ||||||||||| ||||||| | ||| Sbjct 58133 TTCTTATCTAAGCCATACGCAATAGCAGCAGCCGTTGGTTCATTGATAATTCGAAGTACA 58192 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| |||| |||||||| || || |||| || || || || || || Sbjct 58193 TTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAGAGTCATTGAAGTAA 58252 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || | || |||| Sbjct 58253 GCTGGCACTGTGACCACAGCAT 58274 >seq537433 Length=909 Score = 98.7 bits (108), Expect = 7e-15 Identities = 418/644 (65%), Gaps = 25/644 (4%) Strand=Plus/Plus Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || ||||| ||||| || ||||| | |||| ||| | || | | |||| |||| | Sbjct 191 TTGTCAAAGTCTTCTCCACCCAAGTGGGTATCTCCAGCTGTTAATTTGACTTTAAAAATT 250 Query 282251 CCATCTTCAAGAGACAAAAGAGTA---ACATCATGGGTTCCACCACCCATATCAAAAATA 282307 |||| |||| || ||| | |||||| || || | |||| ||||||||| Sbjct 251 CCATTCTCAAT---CATAAGGATTGATACATCAAAAGTGTCATCTCCCAAATCAAAAATC 307 Query 282308 AGTACATTCATTTCTTTGTCTTGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAG 282365 || |||||| ||| | || || || |||| | |||| |||| |||||| ||| Sbjct 308 AGCACATTCCTTT--TAGTTCTGACCTTCTTATTTAAGTCATAAGCAAGAGCAGCCACAG 365 Query 282366 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 282425 |||| ||||| |||||| | || || ||||||||||| |||| ||| |||| || | Sbjct 366 TTGGCTCATTGATAATTTGAAGTACTTTGAGACCAGCAATAGTTCCAGCAACTTTTGTTG 425 Query 282426 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTT 282485 | || | | || || | ||||| || || || || | | ||||| || || | Sbjct 426 C-TGCCCCCGAGAGTCATGGAAATA-GCTGGCACTGTGACTATGGCATTGGTAACAGTCT 483 Query 282486 TTCCAATATAAGCGCTTGCTGTTT-GTTTCATTTTACTTAAAATCATTGATGAAATTTGT 282544 ||| || |||| | | ||| || ||| || | | || ||||||||| | || | Sbjct 484 TTCAAAGGTAAGATTCTACAATTTCCTTCCATCTTTGTCAGAACCATTGATGATACTTCT 543 Query 282545 TCTGG--AGAA--TATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATT 282600 ||||| |||| || |||| | |||| ||| |||| | | || | Sbjct 544 TCTGGGTAGAAATGTTTTCTTG---CCCCTTTG-TATTCAACTTGGACCTTAGGCCTGCC 599 Query 282601 ACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATT 282660 || |||| | | |||||||||| | ||||| || || | ||||| ||| | Sbjct 600 TGCATCATTTACCATGATAAATGGCCAGTGCTTCATGTCAGACTAAACACCAGCATCA-T 658 Query 282661 AAAATCTCT-ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719 |||||| | || || | | ||| |||||||||| || ||||| | || | |||| Sbjct 659 CAAATCTATGTCCGATCAGACATTTGGCATCAAAAACTGTGTTGGTCTGCTTCATTGCAA 718 Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779 | || | ||||| |||| ||||| |||||||| || | || | |||||| | | Sbjct 719 CCTGCTTCTTGGCCACATCCCCAATTCATTGTTCTGTGTCAATGAAAGCAACATA-GTTC 777 Query 282780 GA-GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTT 282822 | | |||| ||||| || ||| | | ||| ||||| || || Sbjct 778 CACATGGTGCAGTTACCCTGGTCACTAGAAATTATTTCCACCTT 821 >seq41325 Length=179352 Score = 91.5 bits (100), Expect = 1e-12 Identities = 178/258 (69%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 281674 ACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA- 281732 |||||| ||||| | ||||| ||| ||| ||||||||| | || | | || |||| Sbjct 22755 ACCAGCAGTTTCAATGCCAAGGGAATGAGAAGTGACATCCAAGAGCAACAAATCCTGAAC 22814 Query 281733 -GTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 281791 | ||| || | | ||| ||||| || | || ||| ||| |||| |||||| Sbjct 22815 AGATTTGCAGATTTGTCTCCAGATAGAATGTCTACCTGGTCAGCTGCATCATAAGCAACA 22874 Query 281792 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 281851 ||||||||||| |||| | ||| |||| ||| | |||||| || | | |||||| Sbjct 22875 GCTTCATCAGGGTTAATGCTACTATTCAGTTCTTTCCAATTGAAGAAGTCTTGCAGAAGT 22934 Query 281852 TGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGA 281910 | ||| | ||| ||||| | | || |||||||| || |||| ||||| | |||||| Sbjct 22935 T-TCTGAATCTTGGGAATCCTGGTAGAGCCTCCAAC-AAAACAAGCTCATGTATCTGTGA 22992 Query 281911 TTTATCCAGTTTTGAATC 281928 || | ||||| | ||| Sbjct 22993 CTTGACTAGTTTGGCATC 23010 >seq20595 Length=81188 Score = 89.7 bits (98), Expect = 4e-12 Identities = 132/186 (71%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGA---TTTATCAGCGGCAGTCACATT 281436 ||| ||||| || || || || ||||||| || ||| || | || ||||| Sbjct 50131 ATTGGTAATTGTGATTTTGTT---TTTGTTTCCTGTACCTTTGTCCTCAGCTGTCACTCG 50075 Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 |||||||||||| |||| | ||||| ||||||||||| || || || || | |||| Sbjct 50074 AAGAATACCATTAACATCTATCTCAAAGGTGACTTCAATCTGGGGAACTCCACGGGGAGC 50015 Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 281556 ||| || || || || || ||||||||||||| || ||| ||||| || | ||| Sbjct 50014 AGGAGGAATTCCAGTCAGATCAAATGTTCCCAGAAGATGATTGTCTTTTGTTAGGGGTCG 49955 Query 281557 TTCACC 281562 |||||| Sbjct 49954 TTCACC 49949 >seq12905 Length=164903 Score = 87.8 bits (96), Expect = 1e-11 Identities = 207/311 (67%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 ||| ||||| ||||| || ||||| | | | ||| | || | | | |||| |||| Sbjct 164295 ATTGTCAAAGTCTTCTCCACCCAAGTGGTTGTCTCCAGCTGTTGATTTGACTTCAAAAAT 164354 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACAT--CATGGGTTCCACCACCCATATCAAAAATA 282307 || ||| |||| || ||||| | |||| || || | ||| |||| | ||| ||| Sbjct 164355 TCTATCCTCAATAGT--AAAGATTGACATATCAAAAGTGCTACCTCCCAAGTAAAATATA 164412 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 || |||| | |||| | || ||||| | ||||| |||| ||||| | ||||| Sbjct 164413 AGCACATCCCTTTCAGCTCCAACCTTCTTATCTAAGCCATAAGCAATAGCAGGAACAGTT 164472 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 |||||||| |||||| ||||| || |||||||| || | | |||||| || || Sbjct 164473 GGTTCATTGATAATTTGATGTACATTGAGGCCAGCAATAGTTGCAGAATCTTTTGTTGCC 164532 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || || || || || || || || || || || || |||| || || ||| Sbjct 164533 TGGTGCTGAGAGTCATTGAAGTAAGCTGGCACTGTGGATACAGCATTGGTAACAGTCTTT 164592 Query 282488 CCAATATAAGC 282498 |||| ||||| Sbjct 164593 CCAAGGTAAGC 164603 >seq30574 Length=102112 Score = 86.0 bits (94), Expect = 5e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| || |||| ||||| ||||| ||||||||| | || || | ||||| Sbjct 81178 TGTTGTAGCTACTGTAGCTTTTGGGATGGGCATTAATAAAGCTGACATTCGCAAAGTTAT 81237 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||| || || || || ||| | || ||| || || || |||||||||||||| || || Sbjct 81238 TCACTATGGTGCACCTAAGGAAATGGAATCCTACTACCAGGAAATTGGTAGAGCTGGCCG 81297 Query 131296 TGATGGA 131302 ||||||| Sbjct 81298 TGATGGA 81304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3713154981092154