Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq9385 102 2e-16 seq56394 96.9 7e-15 seq32185 84.2 4e-11 >seq9385 Length=230659 Score = 102 bits (112), Expect = 2e-16 Identities = 145/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || |||||||| || || || || || ||||| | | | || ||||| || || Sbjct 28130 TGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAGCTGC 28189 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | || || | ||| ||||| ||||||| |||||| || || || Sbjct 28190 TTACCAGCAAAGATCAACCTCTGCTCATCAGGAGGAATTCCTT-CTTATCCTGGATGTTG 28248 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||| || |||| || || || ||||| || | | | || ||||| ||||| Sbjct 28249 GCCTTTCCAGTTTCTATAGTGTCCGAGGGTTCAACCTGGAGCATGATGGTCTTCCCTGTA 28308 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 28309 AGGGTCTTCACAAAAATCTGCAT 28331 >seq56394 Length=146557 Score = 96.9 bits (106), Expect = 7e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||||||||| || || |||||||| ||||| ||||||||| Sbjct 141259 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGATCAGGAGGAATTCCTTCC 141200 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||| | || |||| | ||||||||||| || ||||| | ||| || || | | Sbjct 141199 TTAACCTGGCTCTTGGGCTTTACATTTTCTATAGTATCCAGGGATTCAACCTCAAGTATG 141140 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || |||| || | | | || ||||| |||||||| || Sbjct 141139 ATGATCTTCCCCATAAGGATATTCACAAAAATCTGCATCAT 141099 >seq32185 Length=59521 Score = 84.2 bits (92), Expect = 4e-11 Identities = 129/183 (70%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 82631 ATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTG 82690 ||| || ||||| | | | | || ||||| || ||||| ||||||||| | | || || Sbjct 1485 ATTGTAGTCAGACAAAGTATTGCCATCTTCAAGCTGTTTACCAGCAAAGTTCAACCTCTG 1544 Query 82691 TTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 ||||| ||||| |||||||||||||| || ||| | || |||||||||| || || | Sbjct 1545 CTGATCAGGAGGCATTCCTTCCTTATCCTGGATCGTGGC-CTTACATTTTCTATAGTGAC 1603 Query 82751 ATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || | | | | |||| || | | ||||| ||||| |||||||| Sbjct 1604 TAAGGGTTCAACCTTGAGCATGGTGATCTTCCCCATTATGGTCTTCACAAAAATCTGCAT 1663 Query 82811 TAT 82813 || Sbjct 1664 CAT 1666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 974787256894231