Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1723 194 2e-44 seq48367 131 2e-25 seq13838 100 3e-16 >seq1723 Length=1657771 Score = 194 bits (214), Expect = 2e-44 Identities = 528/805 (66%), Gaps = 10/805 (1%) Strand=Plus/Plus Query 162172 TCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGG 162231 || || | ||| |||||||||||||| |||||||| || ||||| || ||||| | Sbjct 464703 TCACCAGCTCCAAACACGCACACGGAGCGCACGTGGGTACCACTGCATGGTGGATAAGGC 464762 Query 162232 GCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGC 162291 || || | | ||||| || ||| |||| |||||||| || ||||||| | ||| | | Sbjct 464763 GCGCCGTTGGAAACATCACCTTCGAAGTACTGCCACTTGACAAACCTAGCAACAGCGTTC 464822 Query 162292 ATGTCGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTC 162351 ||||| || ||| ||||| | ||| || | ||||| || || | || Sbjct 464823 ATGTCAGACAAGTCATACTTCTGGCTTGAGGGGCGAGAGCCAGGGACTTTGGGGATCCTT 464882 Query 162352 TGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAAC 162411 || | || ||||| ||| || ||||| ||||| || |||| | ||||||||||||| Sbjct 464883 TGGATGGTGGCCCAGAGGAACTCATCTGGGCTATATGTGTCCTGTGCCCACTCCATGAAC 464942 Query 162412 TCCCTGACCGTTTT-ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTA 162470 | ||| |||| || | || | || || || ||| | || | ||||| Sbjct 464943 T-TTTGAATATTTTCATTTTCCAGCACATAGCCTACATATTCCCTACTGACCACGAAGTA 465001 Query 162471 CGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTT 162530 ||||| || ||||| | || | | ||||| | ||||| || || ||||| Sbjct 465002 GGCGCTGCCTGAAAAGAGAGGAGTTTTGAGCGGAGGCTGTGCTTTGCCTACTCCAGTGTT 465061 Query 162531 GACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGA 162590 | | | || || | || |||| ||| || |||| || | ||| ||| || Sbjct 465062 TGTCAGCTTCCCATCAATGATGACGTATCTTTTTTTCCATCTCTCTTCCTTGTTGGAAGG 465121 Query 162591 CGGGTGTTCGGTCTCTAGACTGTTACGACCCCCC----AAGGCCTTCAGCTGACGCACCA 162646 | | || || || || |||| | |||| |||| ||| |||| | || | Sbjct 465122 CATCTTCTCAGTTTCCAGGTTGTT----CTCCCCTATGAAGGACTTGAGCTTCCTGACAA 465177 Query 162647 TCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACT 162706 | || | ||||| |||| || || || | || || ||||| || | || ||||| Sbjct 465178 TTTCCAAGTTGGTTTTAATAGGGAAATCCATACCACAAAGATTGATCAAGTACTTCCAGC 465237 Query 162707 TAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACG 162766 | | || | || |||||| |||| | ||||| || || ||||| || |||||||| | Sbjct 465238 TTGCACTCATTCTGTACAGGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGACTCCAGG 465297 Query 162767 ACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTA 162826 | || || || || |||||||||| |||| || |||||||| || || || || | | Sbjct 465298 ATGCATAAACAACACTCTCCAACCGGCTGGCCACGAAGACATTATCAAAGCAGGATGCAA 465357 Query 162827 TCCCCATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATA 162886 | ||| ||| || | | || || ||||| | || ||||| | |||||| | Sbjct 465358 TGCCCCGCACCGCGTTTAAAAAGGATTCCTCTGCTTTTTTGTCCACGTGAATGCAGTAGA 465417 Query 162887 GATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTA 162946 ||||||||| |||||||| ||||| | || || | ||| || |||||||| || | Sbjct 465418 AATTCTGAGGCATATAGATGGCTCTCAGGAGCCTGTCAAGCATTTCAATCTTATGATGAA 465477 Query 162947 CCACGATAGAATACGCTATGGGGAA 162971 |||| || ||||| || || || || Sbjct 465478 CCACTATGGAATATGCAATTGGAAA 465502 >seq48367 Length=227479 Score = 131 bits (144), Expect = 2e-25 Identities = 381/578 (66%), Gaps = 13/578 (2%) Strand=Plus/Minus Query 176975 CACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAG 177034 ||| |||||||| | || | || | ||||| || || || || || |||| ||| || Sbjct 206514 CACATGAATGAATGAATCAGCTGGAATATAATTCTCATAGTTTTCCCTAGATGGTCCCAG 206455 Query 177035 TACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCT 177094 || | ||||| | ||| |||| || | |||||| ||||| || || || || | Sbjct 206454 GACAACAGGTACTGAACCAGCCAAAAATGCATTGTAGAGCTTTTCTGTGATGTAATCTTT 206395 Query 177095 GTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATAGTAGCGGGATGAAG-T 177153 ||| | ||||| ||||| | ||||| |||||||| | ||||| | | |||| || | Sbjct 206394 GTGAATTGAGTTTTCAAAAGAAAGATAAAATTTACAAGTAGATA-TGGTGGGAATCAGAT 206336 Query 177154 CATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTAC 177213 | ||| | ||| ||||| | | | | ||| || || || || || || | Sbjct 206335 TTTTATCATTCACATATTCTCCAAATGCTTGCCCATAGGTGTGGATTTCAATACTCTTGC 206276 Query 177214 TGAGCTCTAGGTAGTATCTCGATCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCAGC 177273 ||||||| ||| ||| | || | || || |||||| || || |||||||||| Sbjct 206275 TGAGCTCGTTGTAATATTTGACCCTGGCATGTTCAGGGTTCCAGTTACTCACGACCCAGC 206216 Query 177274 AAACTAACTTGCTCTTTGCG-GGAACGGGATTCGAT-ACTAATGCAGTGTCTCTGAGCGT 177331 | || ||||| ||| |||| || || ||| | || || | ||| || | ||| Sbjct 206215 ACACCAACTT-CTCCTTGCTTGGCAC----TTCAAACACAAAGGGAGTTGTGCTCACCGT 206161 Query 177332 TAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGAA 177391 | | ||||| ||||| || || || || || || | || |||| || || ||||| Sbjct 206160 CAAGAAGCCATAAGGCACTTGTATGTCTGAATCACGGCGATAAGTTAGAGTCAGGTTGAA 206101 Query 177392 AAGGTTTTCTATACC--TTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCAT 177449 | || || || || | |||| ||| | | | |||| || ||||| |||||||| Sbjct 206100 CAAGTGCTCGATGCCACTCTTTTG--GGGAGTATGAGTGGGGGACTCTAAATTCATCCAA 206043 Query 177450 ATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTTATC 177509 |||||||| ||||||| || |||| | | ||||| || |||| || || Sbjct 206042 ATCCACTTCTGAAAGGGGGGCCTGGCCTGCTGAGGTAAGTTAGTCAGATCCCAGCTGATG 205983 Query 177510 TCTCTGTGGTGAAAGACTACGGCATTGGCTTTGTAATA 177547 ||||||||||| | | || |||| || ||||| ||| Sbjct 205982 TCTCTGTGGTGTATCAGGACCGCATGGGATTTGTTATA 205945 >seq13838 Length=123503 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 171524 ACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGA 171583 |||||||||| || ||| || | ||| ||||| |||| | || || ||| |||| || Sbjct 19195 ACAGTCCCCAGGTATAAAACCTGGCAGATCACTTCCT---TCCCAACCTGAGTTTTGGGG 19139 Query 171584 TCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGG--TTT 171641 ||||| || | || ||||| || ||||| || ||||| || ||| ||| | | | Sbjct 19138 TCTTTGACCCGGAGGATGCTGGTGACAGACGTCGTCCCATTTGAATG--GAAGTGACTCT 19081 Query 171642 TAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAG 171701 ||||||||| || ||||| | || | | ||||| | || |||| || || | | Sbjct 19080 CAGTACTATTCTCAATTCCTGTCCCAGTGCCCTTCCAGGAGATGGCAGGGGCCGGGCGGG 19021 Query 171702 CAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAACTCATAGTG 171750 |||| ||||||||||| ||||||| ||||||||| | | ||||| Sbjct 19020 CAGTCGCAGAGCAAGTGATGTTTAGGTGGTCTTCGAAGTAGTTGTAGTG 18972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574385658478400