Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq177731 104 7e-19 seq63684 100 9e-18 seq501229 93.3 1e-15 >seq177731 Length=270 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 170 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 111 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 110 CCGGGTTTCGGC 99 >seq63684 Length=5518 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 5384 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 5443 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 5444 CCCGGGTTTCGGC 5456 >seq501229 Length=531 Score = 93.3 bits (102), Expect = 1e-15 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 2760 GTGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCT 2819 || |||| || ||| ||||| |||||||||||| ||||||||||||||||||||||| | Sbjct 506 GTTTTTAACGCCGAAATAGCTTAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCTT 447 Query 2820 GGTTCAACCCCGGGCTTCAGC 2840 ||||| | |||||| ||| || Sbjct 446 GGTTCGATCCCGGGTTTCGGC 426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15752585514705