Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq13838 197 2e-45 seq42693 129 7e-25 seq13983 114 1e-20 seq14550 96.9 4e-15 >seq13838 Length=123503 Score = 197 bits (218), Expect = 2e-45 Identities = 235/319 (74%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || ||||||| |||| | || ||| || || || ||| Sbjct 16594 GTGGTGACCCAGGATGAAAGAAAGCTGCTGCACACAACCGCATCCTTGCGGTGTTCTCTG 16653 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | || || ||||| ||||||| || |||||||||| || | | ||||| Sbjct 16654 AAAACATCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCAGTGAGCCCAGAA 16713 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | |||| |||||| ||| || || || ||||||| || || || |||| Sbjct 16714 AACATGGTCACTTACAGCAAAACCCATGGCGTTGTAATCCAGCCTGCCTACAAAGACAGA 16773 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||| ||||| | || |||||| ||||||| |||||| || ||||| || || | Sbjct 16774 ATAAACGTCACCGAACTGGGACTCTGGAACTCAAGCATCACCTTCTGGAACACAACACTG 16833 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| ||||| ||||||| || ||||| ||||| ||||| ||| |||| |||||||| Sbjct 16834 GAGGATGAGGGCTGCTACATGTGTCTCTTCAACACGTTTGGCTCTAGGAAGGTCTCGGGG 16893 Query 171372 GTGGCCTGCCTCACCCTCT 171390 |||||||| ||||||| Sbjct 16894 ACAGCCTGCCTTACCCTCT 16912 Score = 136 bits (150), Expect = 5e-27 Identities = 182/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| ||| || || || || | || || |||||||| |||||||| || Sbjct 18951 GTACAGCCCATAGTGCACCTCCACTACAACTACTTCGAAGACCACCTAAACATCACTTGC 19010 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | |||||||||| | ||| || | |||||| | ||| ||| |||||| Sbjct 19011 TCTGCGACTGCCCGCCCGGCCCCTGCCATCTCCTGGAAGGGCACTGGGACAGGAATTGAG 19070 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| ||| || | |||||| ||||| || || ||||| ||||| | |||| Sbjct 19071 AATAGTACTGAGAGTCACTTCCATTCAAATGGGACGACGTCTGTCACCAGCATCCTCCGG 19130 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||| | |||| | || ||||| || |||||||| || | ||||||| Sbjct 19131 GTCAAAGACCCCAAAACTCAGGTTGGGAAGGAAGTGATCTGCCAGGTTTTATACCTGGGG 19190 Query 171633 AATGTAACTAACT 171645 | ||| | | ||| Sbjct 19191 ACTGTGATTGACT 19203 >seq42693 Length=180072 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||| || | || || | ||||||||||||||| | |||||||| ||||||||||| Sbjct 13022 AGGCCCGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 13081 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || ||||| ||||| || || ||||||||||| |||||||| || |||||||| | || Sbjct 13082 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACC 13141 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || || || || ||| ||||| || |||| ||||| Sbjct 13142 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAATGCCAT 13182 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| |||||||||||||| || || ||||| |||||||| || || || | Sbjct 18905 GCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTCGGGCA 18964 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | | ||| || ||||||| | ||| ||||| || | ||||||| Sbjct 18965 GAGAATCCCAAGCTGTCCAAAAAATCTCGGGACCCATTGGCATCCCAAATTCTCACTCCC 19024 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| ||| | || |||| | ||||| ||| Sbjct 19025 TTGGAGGACAATTCTTTAGCATTTGTGGATCCC 19057 >seq13983 Length=94873 Score = 114 bits (126), Expect = 1e-20 Identities = 125/167 (75%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| ||||| || || ||||| ||||||||| ||| | | || | Sbjct 50110 AGGGTTACTTGGGTTGCCAAGCCTTATCGGAAATGATCCAGTTTTACCTGGGGAAAGTAA 50051 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| |||| | ||| || || ||||||||| | || | Sbjct 50050 TGCCCCAGGCAGAGAA--ACAG----------GACCCAGAAATCAAGGAGCATTTGAATT 50003 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||||| |||||||| || || |||||| || ||| Sbjct 50002 CCCTGGGAGAGAAGCTGAAGACCCTCAGGATGCAGCTGCGCCGCTGT 49956 >seq14550 Length=171250 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| ||| | |||| | || ||||||| ||||||| | || || ||||| Sbjct 58547 GTACTCCCTGGTTTTTGTCATTGGCGTGATAGGCAATGTCCTGGTGGTTCTGGTACTCAT 58488 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGC 8720 ||| |||||||||| | | |||||||| ||||| | ||||||||||||| Sbjct 58487 AAAACACAAGAGGCTTCGAAACATGACCAGCATCTACTTGTTCAACCTGGC 58437 Score = 96.9 bits (106), Expect = 4e-15 Identities = 196/289 (68%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || | ||||| |||| | || ||||||| Sbjct 98870 GTACTCCCTGGTGTTCATCATTGGCCTCCTGGGCAACATGATGGTTGTGCTGATCCTCAT 98929 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||| || ||| || ||||| || |||| |||| ||||| |||| || ||| Sbjct 98930 AAAGTACAGGAAGCTACAAATTATGACTAATATCTACCTGCTCAACTTGGCAATTTCTGA 98989 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT-TCCACTCGGGGGGAACTGGTG 8788 ||||| | | ||||| |||| || |||||||||| | || | |||| || Sbjct 98990 TCTGCTCTTTCTCTTCACTGTCCCATTCTGGATTCACTATGTTCT---GTGGAA----TG 99042 Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848 ||||| | |||| ||||||| || | | || ||| || |||| ||| Sbjct 99043 AGTGGGGTTTTGGCCACTACATGTGCAAAATGCTCTCTGGGTTTTATTACCTGGCTTTGT 99102 Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 ||||||| || | || ||||||||| |||| | |||||||| || || Sbjct 99103 ACAGCGAGATCTTTTTCATCATCCTGCTGACAATTGACAGGTACCTGGC 99151 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||||||||| ||||| | ||| | | |||||| ||||||||| || || ||||| Sbjct 43862 GTACTCTCTCGTGTTCATCACTGGAGTGGTAGGCAATATCCTGGTGATTCTGGTGCTCAT 43803 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || | |||||||| | |||||||| ||||| ||||||||||||||| | ||| Sbjct 43802 GCAGCATAAGAGGCTTCAAAGCATGACCAGCATCTACCTGTTCAACCTGGCTGTCTCTGA 43743 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | ||||||| | || || |||||| ||| Sbjct 43742 TCTGGTCTTCCTTTTCACTTTACCTTTCTGGATTGACT 43705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579406289925600