Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq8215 152 7e-31 seq25246 143 4e-28 >seq8215 Length=345707 Score = 152 bits (168), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||| || |||| |||| || |||| ||||| Sbjct 148265 TACAAGGTGCTGAAGCAGGTGCATCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 148318 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| || ||||||| ||| Sbjct 148319 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 148378 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||| ||| || ||| | |||||| | ||||| ||||||||| Sbjct 148379 CTGGCGCATTACAACAAACGCTCGACCATCACGTCCCGCGAGGTGCAGACGGCCGTGCGC 148438 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||||| ||| || || ||||||||||||| Sbjct 148439 CTGCTGCTGCCGGGGGAGCTGGCCAAGCATGCTGTGTCCGAGGGCACCA 148487 >seq25246 Length=185022 Score = 143 bits (158), Expect = 4e-28 Identities = 170/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| |||||||||||||| || || ||| || |||| ||||| Sbjct 4638 TACAAAGTGCTGAAGCAGGTGCACCCGGACAC-----GGGAATC-TCGTCCAAGGCCATG 4691 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||| ||||| | || ||||| | | |||||| |||| Sbjct 4692 GGCATCATGAACTCCTTTGTCAATGACATCTTTGAGCGCATAGCAAACGAGGCTTCTCGC 4751 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | ||||||||| || ||| |||| ||||||||||| || |||||| Sbjct 4752 CTGGCGCATTACAACAAGCGGTCTACAATCACATCGCGGGAGATCCAGACGGCGGTGCGC 4811 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| |||||||| | ||||||||| || |||||||||| Sbjct 4812 CTTCTACTGCCCGGAGAACTGGCTAAGCACGCCGTGTCGGAGGGCACCA 4860 Score = 116 bits (128), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||| || ||||| |||| |||| ||| ||| ||||| Sbjct 58844 TACAAGGTGCTGAAGCAAGTCCACCCTGACACCGG-----CATC-TCCTCTAAGGCCATG 58897 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| || || || |||||||| |||| ||||||| ||||| || Sbjct 58898 GGAATCATGAATTCCTTCGTGAACGACATCTTCGAGCGCATCGCAGGTGAGGCTTCCCGT 58957 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| |||||||| Sbjct 58958 CTGGCGCATTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTGCGT 59017 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| ||| |||| | ||||| || || |||||||||| Sbjct 59018 CTGCTGCTGCCCGGGGAATTGGCTAAACACGCTGTGTCAGAGGGCACCA 59066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7123833954351898