Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq9385 98.7 9e-16 seq1649 89.7 5e-13 >seq9385 Length=230659 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| || | ||| || | | || |||||||||||||| ||||| Sbjct 28142 TCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAGCTGCTTACCAGCAAAG 28201 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||| || | ||||| | || ||| ||| ||| || ||| |||| Sbjct 28202 ATCAACCTCTGCTCATCAGGAGGAATTC-CTTCTTATCCTGGATGTTGGCCTTTCCAGTT 28260 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | ||| |||| | | |||| || || || || | || |||||| Sbjct 28261 TCTATAGTGTCCGAGGGTTCAACCTGGAGCATGATGGTCTTCCCTGTAAGGGTCTTCACA 28320 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 28321 AAAATCTGCAT 28331 >seq1649 Length=186589 Score = 89.7 bits (98), Expect = 5e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||||||||||||||| || | |||||| || | || |||||||||||||| ||||| | Sbjct 59857 CCTTTTGAATGTTGTAGTCAGACAAGGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGA 59798 Query 35607 TCAACCGCTGCTGGTCCGAAGGAA 35630 |||||| |||||| || | ||||| Sbjct 59797 TCAACCTCTGCTGATCAGGAGGAA 59774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447640135355320