Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq9385 84.2 2e-11 >seq9385 Length=230659 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 134508 AGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAG 134566 || || || || ||||||||||||||||||||||| | ||| || || || || || Sbjct 28127 AGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGACAA-AGTATGGCCATCTTCCAG 28185 Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| || || ||||| ||||| | ||||| ||| || || || ||||| || || || || Sbjct 28186 CTGCTTACCAGCAAAGATCAACCTCTGCTCATCAGGAGGAATTCCTTC-TTATCCTGGAT 28244 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 || || | | || | ||||| || | ||| || | ||| | ||||| || || Sbjct 28245 GTTGGCCTTTCCAGTTTCTATAGTGTCCGAGGGTTCAACCTGGAGCATGATGGTCTTCCC 28304 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || || ||||| ||||| Sbjct 28305 TGTAAGGGTCTTCACAAAAATCTGCAT 28331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501862954985080