Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq19169 84.2 3e-11 >seq19169 Length=151675 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 214106 TTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGG 214165 ||||| || ||||| ||| | ||| |||| || | |||||||| | ||||||||||| Sbjct 18784 TTTGGTCTGGTGCCTGGTCTGATGATGTATGCTACAATCTGGCTACGGGAGCACAACAGA 18843 Query 214166 GTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCA 214221 || || || | || ||||| |||||||| || ||| |||| |||| || ||||| Sbjct 18844 GTGTGTGATATACTCAAACAGGAGCACCCCGAGTGGGACGATGAACGACTCTTCCA 18899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718280768892960