Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1495 116 5e-21 seq4803 114 2e-20 >seq1495 Length=642193 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||| || || || | ||| || ||||| || ||||||||||| || || | ||| || Sbjct 168299 TCATCCCTGCTGATGAGTTCATTTGAAAAGGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 168240 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||| |||||||| ||||| || |||||||| || ||||| || Sbjct 168239 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 168180 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| ||||| Sbjct 168179 ACCACTCTTTCTCC 168166 >seq4803 Length=331686 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || |||||||| || || || | || Sbjct 153628 TGAAATTCTCCTGACAATACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 153569 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| |||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 153568 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 153509 Query 68839 TTTCTAAGACCAT 68851 ||||| | |||| Sbjct 153508 TTTCTTATCCCAT 153496 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| |||||||| || |||||| || | || || || ||||| || | Sbjct 157528 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGTTCAGCAATATGGATGT 157469 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || ||||||||||||||||| ||||| || || ||||| || | || | ||| Sbjct 157468 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 157409 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | ||||||| | | || || | ||||| |||| Sbjct 157408 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 157358 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | |||||||| |||||||||||||| || ||||||||||| ||| Sbjct 140781 GTCCCAGCATTGAAGAGAGTAGGAGAGGCGTGAGTGAACCACTTCTCAGAAAGCAGGTTG 140722 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||||||| || | || ||||| | ||||| || | | || | ||||||| Sbjct 140721 TAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 140662 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 140661 ATATGCTGTGGTCTTTC 140645 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 ||||| | ||| |||||||| || || | || | ||||||||||| || || || | Sbjct 150270 GATCCCTCATACGTTTCATAGGGGCCATGCTCCTTGGCTAGTTCACAGCTGGCTTCCAGG 150211 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || || |||||||| ||||| || || | |||||| | || |||||| | || || Sbjct 150210 GCTCCATAATAAATGGTTTCAAAGATTTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 150151 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || ||||| | || || || |||||||| | ||||| |||||||| || || || Sbjct 150150 AAGGGATATCTCATCAGGATGAAAGCATCTGCTAGACCCTGTACCCCAATTCCAATGGGC 150091 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | |||||||| Sbjct 150090 CGATGGCGTTTATTTGA 150074 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || || ||||| || | Sbjct 132105 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 132046 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||||||||| || | ||||| | || || ||| | || ||||| | || || | Sbjct 132045 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTGGCCGCTGTCTCGGCAGCCAGGGTGTCCA 131986 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || |||| || |||||||| |||||||||| Sbjct 131985 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGAATTACTTTCATGG 131938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 682103623939560