Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq12971 107 2e-18 seq1495 105 5e-18 seq42693 102 6e-17 seq7634 98.7 8e-16 seq241 98.7 8e-16 seq504663 82.4 6e-11 >seq12971 Length=450841 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 |||||| |||||||||||| | |||| || || ||||| ||||| || || |||||| Sbjct 9182 CGGTTTAGCCAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAGATTGCC 9241 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||| ||||| ||||||||||| || || || || ||||| |||||| Sbjct 9242 ATGGAAAACATTCACTCGGAGATGTACAGTCTCCTTATTGACACTTACATTAAAGAT 9298 >seq1495 Length=642193 Score = 105 bits (116), Expect = 5e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||| || | || || ||||| | ||| ||||| |||||||| || ||||| ||||| Sbjct 168166 GGAGAAAGAGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCTGGATCATTTGCT 168225 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || ||||| ||| ||||||| |||| | |||||||| |||| ||||||||||| | Sbjct 168226 GCTATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACCTTTTCAAATGAACTC 168285 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 168286 ATCAGCAGGGATGAAG 168301 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||||||||| || |||||||| ||||| |||||||| || ||||| | Sbjct 175794 AAAATCCCTTTGATTTTATGGAGAACATTTCGTTAGAAGGGAAAACAAATTTCTTTGAGA 175853 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||| ||| || ||||||||| | | |||||| Sbjct 175854 AACGAGTTTCTGAGTATCAGCGATTTGCAGTCATG 175888 >seq42693 Length=180072 Score = 102 bits (112), Expect = 6e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||||||||| ||||| ||| | ||||| || || || ||||| || || | Sbjct 13184 TGATGGCATTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGTGAATGGGGAGCTAT 13125 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | || || || ||||| || ||||| || || || || || ||||| || | Sbjct 13124 CTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCCTTCAACATTGCCA 13065 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACA 41197 | |||||||||||||| || ||||||||||| Sbjct 13064 GCTATGCTCTGCTCACCTACATGATTGCACA 13034 >seq7634 Length=216425 Score = 98.7 bits (108), Expect = 8e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| || ||||| || |||||||||||||| | ||||| || |||||||| ||| Sbjct 209256 GTAGAAAATCCATTTGACTTCATGGAAAATATTTCACTAGAAGGAAAGACAAACTTCTTT 209315 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || || || |||||||||||| | ||||| |||||| Sbjct 209316 GAGAAGCGAGTAGGAGAATATCAGAGGATGGGAGTCATG 209354 >seq241 Length=438946 Score = 98.7 bits (108), Expect = 8e-16 Identities = 175/251 (70%), Gaps = 7/251 (3%) Strand=Plus/Plus Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259 || |||||| | || ||| |||| ||| ||||||| ||| ||||| | || ||| | | Sbjct 742 CAGTGGTTTCAGCAGTGTGCTGCAGTTTCTAGGACTGTATAAAAAAACTGGTAAACTGGT 801 Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAAT---ACAA 47316 ||| || ||||| || ||| || ||||| ||||| |||||||| ||| ||| Sbjct 802 ATTCCTTGGGTTGGATAATTTGGGGAAAACAAAGTTACTACACATGCTGAAAGGTGACAG 861 Query 47317 TTGCATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGG 47376 || || | ||| ||| ||| ||||||| || || ||| | || || |||||||| Sbjct 862 --GCTTGGCCAA-CATGTCCCAACACTACATCCCACTTCAGAAGAGCTTACTATTGCTGG 918 Query 47377 CATAACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAA 47436 ||| | |||| || |||||| | || || ||| | ||||| | ||| | ||| ||| Sbjct 919 CATGATGTTTACAACTTTTGATCTTGGTGGGCACGTGCAAGCCTGAAGAGTATGGAAAAG 978 Query 47437 TTATTTTCATG 47447 ||| ||| || Sbjct 979 CTATCTTCCTG 989 >seq504663 Length=551 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || |||| ||| || ||| |||||| || ||||||||| Sbjct 481 GGTTTGTCATCTTTCCAATCCAGTATCCTGATATCTGGAGAATGTATAAGCAAGCACAGG 422 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 421 CATCTTTCTGGACAGCAGAAGAGGT 397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394745159922145