Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4803 104 3e-17 >seq4803 Length=331686 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| ||| |||||||||| ||||||||||| | |||| | |||||| || || Sbjct 148740 CTCATCTTTACTGGTGTACTCTACTATTTCTGTACACAGGTTGCTGCACTTAATGGTTCC 148681 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| ||| || | || |||||||||||||| || || || Sbjct 148680 CAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAGTCTTTGTAGAGCATGTATGGGGTACC 148621 Query 111385 CGTCTCCGTCTGTGA 111399 |||||| ||||| || Sbjct 148620 CGTCTCTGTCTGAGA 148606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 623638688498400