Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4803 89.7 6e-13 >seq4803 Length=331686 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 ||||||| || ||||| ||||| ||||||||||| ||||||||| ||||||||| |||| Sbjct 148604 AGTCTCAGACAGAGACGGGTACCCCATACATGCTCTACAAAGACTCCTGTAACCGGAAGA 148663 Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAAT 105015 | || || |||| |||| || ||| | ||| || ||||||||||| Sbjct 148664 GCAACCAGCAGAACCTGGGAACCATTAAGTGCAGCAACCTGTGTACAGAAAT 148715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579180679271960