Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq537433 159 1e-33 seq9385 149 2e-30 seq41325 143 8e-29 seq12905 129 2e-24 seq38941 123 8e-23 seq56394 122 3e-22 seq11023 122 3e-22 seq17266 111 5e-19 seq434954 107 6e-18 seq4083 104 7e-17 seq20595 102 2e-16 seq948 102 2e-16 seq507799 98.7 3e-15 seq32185 96.9 1e-14 seq32429 95.1 4e-14 seq531388 93.3 1e-13 seq3787 93.3 1e-13 seq1993 89.7 2e-12 seq1649 86.0 2e-11 seq56748 84.2 7e-11 >seq537433 Length=909 Score = 159 bits (176), Expect = 1e-33 Identities = 278/395 (70%), Gaps = 7/395 (2%) Strand=Plus/Minus Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTT 349557 |||||||| ||||| | | |||||| ||| ||||| |||||| | |||||||||||| | Sbjct 581 GTTGAATACAAAGGGGCAAGAAAACA-TTTCTACCCAGAAGAAGTATCATCAATGGTTCT 523 Query 349558 AGTTAAAATG-AAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616 || ||| |||||||||| ||| | || | | | || || || |||| | Sbjct 522 GACAAAGATGGAAGGAAATTGTAGAATCTTACCTTTGAAAGACTGTTACCAATGCCATAG 463 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 | || || ||||| ||||| |||| | | | | | |||||||||| |||||| | | Sbjct 462 TCACAGTGCCAGC-TATTTCCATGACTCTCGGGGG-CAGCAACAAAAGTTGCTGGAACTA 405 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 |||| || | || || || ||| || ||||| || |||| || || |||| |||| Sbjct 404 TTGCTGGTCTCAAAGTACTTCAAATTATCAATGAGCCAACTGTGGCTGCTCTTGCTTATG 345 Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaa-aaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 | |||| | | || | | |||| ||| | || ||||||||||| || | || Sbjct 344 ACTTAAATAAGAAG-GTCAGAACTAAAAGGAATGTGCTGATTTTTGATTTGGGAGATGAC 286 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 ||||||||||||||| | || | |||| | ||||||||| |||| ||| ||| ||| Sbjct 285 ACTTTTGATGTATCAATCCTTATGATTGAGAATGGAATTTTTAAAGTCAAATTAACAGCT 226 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 || ||||| || | ||||||||||| ||||| || Sbjct 225 GGAGATACCCACTTGGGTGGAGAAGACTTTGACAA 191 Score = 86.0 bits (94), Expect = 2e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 183645 TTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCACCACCTAAATGT 183704 ||||| |||| ||| || || | | | || | ||||| ||||| ||||| || || Sbjct 158 TTAAACTCAGCAATGAAGTGGTTGATCATTCAGTTGTCAAAGTCTTCTCCACCCAAGTGG 217 Query 183705 GTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACA 183764 ||||| ||||| || ||| |||| ||| ||||| | ||||| | | ||||||||| Sbjct 218 GTATCTCCAGCTGTTAATTTGACTTTAAAAATTCCATTCTCAATCATAAGGATTGATACA 277 Query 183765 TCAAATGTACCACCACCCAAATCAAAA 183791 ||||| || || | |||||||||||| Sbjct 278 TCAAAAGTGTCATCTCCCAAATCAAAA 304 >seq9385 Length=230659 Score = 149 bits (164), Expect = 2e-30 Identities = 158/207 (76%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 140531 AAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAG 140590 ||||||||| ||||| || |||||||| || || ||||| || || | |||||||| || Sbjct 28126 AAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAG 28185 Query 140591 TTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAAT 140650 || || ||||||||||| | | |||| |||||||||||||||||| |||||||| || Sbjct 28186 CTGCTTACCAGCAAAGATCAACCTCTGCTCATCAGGAGGAATTCCTTC-TTATCCTGGAT 28244 Query 140651 TTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCC 140710 || || ||| || | || || | || || |||||||| | || | | ||||| || Sbjct 28245 GTTGGCCTTTCCAGTTTCTATAGTGTCCGAGGGTTCAACCTGGAGCATGATGGTCTTCCC 28304 Query 140711 GGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||||||||||||| Sbjct 28305 TGTAAGGGTCTTCACAAAAATCTGCAT 28331 >seq41325 Length=179352 Score = 143 bits (158), Expect = 8e-29 Identities = 246/356 (69%), Gaps = 1/356 (0%) Strand=Plus/Minus Query 349535 GAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGT 349594 |||||| | || ||||||||||| || |||||||| ||| || | || | || Sbjct 23748 GAAGAAGTGTCCTCAATGGTTTTGACAAAGATGAAGGAGTTTGTGAAAACTTACCTTGGA 23689 Query 349595 GAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCT 349654 | || || ||| |||| | | || || ||||| || || ||||| || | | Sbjct 23688 AAGACTGTTACTAATGCCATGGTCACAGTGCCAGCTTACTTCAATGACTTTTAGTGCTAG 23629 Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714 ||||||||||||||||| | ||||| || ||||| || ||||||| || |||| Sbjct 23628 GCAACAAAAGATGCTGGAACTATTGCTGGTCACAATGTACTTTGAATGATCAACAAACCA 23569 Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 ||| || || |||| ||||| | |||| | | || |||| |||| | || Sbjct 23568 ACTCTTGTTGCTATTGATTATGGTTTAAATAATAAGGTTGGAGCTGAAAGAAATGTACTA 23509 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 |||||||| || || | ||||||||||||||| ||| | | ||| || | || |||||| Sbjct 23508 ATTTTTGACTTGGGGGATGGTACTTTTGATGTGTCAGTCTTCACA-TTAAGGATGGAATT 23450 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 |||||||| ||| |||| | ||| || || || |||||| | | | ||||| || Sbjct 23449 TTTGAAGTCAAATCAACAGTTGGAGACACCCACTTTGGTGTATATTACTTTGACAA 23394 Score = 84.2 bits (92), Expect = 7e-11 Identities = 204/307 (66%), Gaps = 3/307 (1%) Strand=Plus/Minus Query 350123 ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGAT 350182 ||| || | ||||| || || | | ||||||| ||| | ||| ||||| || Sbjct 23040 ACACTGAACCCTGTAGAGAAGGACCTTCAAGATGCCAAACTAGTCAAGTCACAGATACAT 22981 Query 350183 GAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAG 350242 || | ||||| ||||| || ||||| | ||||| || |||| | | || || Sbjct 22980 GAGCTTGTTTT-GTTGGAGGCTCTACCAGGATTCCCAAGATTCAGAAACTTCTGCAAGAC 22922 Query 350243 TTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGT 350302 || || ||| | ||||||| ||| ||||| || |||||||||||||| |||| | Sbjct 22921 TTCTTCAATTGGAAAGAACTGAATAGTAGCATTAACCCTGATGAAGCTGTTGCTTATGAT 22862 Query 350303 GCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAA--AATTGATGATCTAT 350360 || |||| |||| | ||| |||||||| | || | | || || | ||| | | Sbjct 22861 GCAGCTGACCAGGTAGACATTCTATCTGGAGACAAATCTGCAAATCTGTTCAGGATTTGT 22802 Query 350361 TACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTG 350420 | || | ||||| ||| | | ||| ||||| | |||||| ||||| ||| | | ||| Sbjct 22801 TGCTCTTGGATGTCACTTCTCATTCCCTTGGCATTGAAACTGCTGGTAGAGTCAGGGCTG 22742 Query 350421 TTCTTAT 350427 | || || Sbjct 22741 TCCTCAT 22735 >seq12905 Length=164903 Score = 129 bits (142), Expect = 2e-24 Identities = 218/316 (69%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 349576 TGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTT 349635 ||| ||||| || | || | || || || ||||||| || || ||||| || || Sbjct 164610 TGCAGAAGCTTACCTTGGAAAGACTGTTACCAATGCTGTATCCACAGTGCCAGCTTACTT 164551 Query 349636 TAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCT 349695 ||||| | |||| |||||||||||| ||| | ||||| || | ||||| | Sbjct 164550 CAATGACTCTCAGCACCAGGCAACAAAAGATTCTGCAACTATTGCTGGCCTCAATGTACA 164491 Query 349696 AAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGA 349755 ||| || |||||||| |||| | | || ||||| ||||| | ||||| | | || Sbjct 164490 TCAAATTATCAATGAACCAACTGTTCCTGCTATTGCTTATGGCTTAGATAAGAAGGTTGG 164431 Query 349756 CCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACT 349815 |||| || | ||||| ||| | || || ||| | ||||||||| | ||| | | Sbjct 164430 AGCTGAAAGGGATGTGCTTATATTTTACTTGGGAGGTAGCACTTTTGATATGTCAATCTT 164371 Query 349816 AACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGG 349875 || |||| || ||||||||||||| ||| |||| ||||| || | || | ||||| Sbjct 164370 TACTATTGAGGATAGAATTTTTGAAGTCAAATCAACAGCTGGAGACAACCACTTGGGTGG 164311 Query 349876 AGAAGATTTTGATAAT 349891 |||||| ||||| ||| Sbjct 164310 AGAAGACTTTGACAAT 164295 >seq38941 Length=222328 Score = 123 bits (136), Expect = 8e-23 Identities = 586/923 (63%), Gaps = 6/923 (1%) Strand=Plus/Minus Query 349505 TATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAA 349564 |||||||| || | ||| || | || || || || ||||| ||||| | || Sbjct 69850 TATAAAGGAGAGAAGAAAGCCTTCTACCCGGAGGAGATCTCATCCATGGTACTGACGAAG 69791 Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624 |||||||||| || || || | ||| || | | || || | ||||| || || || Sbjct 69790 ATGAAGGAAACGGCGGAGGCTTTTTTGGGCCACAATGTCACCAACGCTGTGATCACGGTC 69731 Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684 ||||||||||| ||||| | ||||| || || || ||||| || ||| || || Sbjct 69730 CCAGCCTATTTCAATGACTCTCAGCGGCAGGCCACCAAGGATGCGGGTGTCATCGCAGGA 69671 Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGAT 349744 | ||||| || ||||| || || || ||||| || || || || || || || | ||| Sbjct 69670 CTCAATGTACTGAGAATAATCAACGAGCCCACAGCCGCCGCCATCGCCTACGGCTTGGAT 69611 Query 349745 AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGAT 349804 ||| ||| || ||| | | || || || || | || || || || || || Sbjct 69610 AAAGGAAGTCACGGAGAGCGGCACGTGCTCATCTTCGACCTGGGGGGCGGCACGTTCGAC 69551 Query 349805 GTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACA 349864 || || | || || | || || || || || || || || || || || || || || Sbjct 69550 GTGTCCATCCTGACGATCGACGACGGCATCTTCGAGGTGAAGGCCACGGCGGGAGACACG 69491 Query 349865 CATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAG 349924 || || || || || || || || || || || || || || || | || || ||| Sbjct 69490 CACCTGGGCGGGGAGGACTTCGACAACCGGCTGGTGAGCCACTTCGTGGAGGAGTTCAAG 69431 Query 349925 CGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGC 349983 | |||| || | || || | | || | || |||| || || | ||||| Sbjct 69430 AG-GAAGCACAAGAAGGACATCAGCCAGAACAAGCGCGCGGTGCGGCGGCTGCGCACTGC 69372 Query 349984 GTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTC 350043 ||| || | || ||| | | | || || | ||||| || | || || || || Sbjct 69371 GTGCGAGAGGGCCAAGAGGACGCTGTCGTCCAGCACCCAGGCCAACCTGGAGATCGACTC 69312 Query 350044 TCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATG 350103 || || |||| || |||| | || || || || || ||||||||||| | || Sbjct 69311 CCTGTACGAAGGCATCGACTTCTACACGTCCATCACGCGGGCGCGGTTTGAAGAGCTGTG 69252 Query 350104 TATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT-TAAAAGATGCAAAAA 350162 | || || ||||||| || |||| || |||| | |||| | | ||||| || | Sbjct 69251 TGCAGACCTATTTAGAGGCACGCTGGAGCCCGTGG-AGAAGTCTCTTCGGGATGCCAAGA 69193 Query 350163 TGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAG 350222 || ||| | | || | || | ||| |||| || || || || || || ||||| | Sbjct 69192 TGGACAAGGCTAAAATCCACGACATTGTTCTAGTAGGGGGCTCGACGCGCATCCCAAAGG 69133 Query 350223 TTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCA 350281 | ||| | | || || | |||||||| || | | | ||| || ||||| Sbjct 69132 TGCAAAAACTGCTTCAGGACTACTTTAATGGACGGGATCTCAACAAGA-GTATCAATCCG 69074 Query 350282 GATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGT 350341 ||||| || || || || || ||||| || |||||| |||||||| || | || | Sbjct 69073 GATGAGGCAGTAGCCTACGGAGCTGCAGTCCAGGCAGCTATTTTAATGGGTGACAAATCT 69014 Query 350342 TCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACT 350401 ||| | | ||| | | | | || ||| |||| || || || ||||| || || Sbjct 69013 GAAAAAGTACAGGATTTGCTTTTGTTGGACGTAGCTCCCCTGTCTCTAGGATTGGAGACA 68954 Query 350402 TCTGGTGAAGTAATGACTGTTCT 350424 |||| | || ||||||||||| Sbjct 68953 GCTGGGGGTGTGATGACTGTTCT 68931 >seq56394 Length=146557 Score = 122 bits (134), Expect = 3e-22 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 ||||||| | | || ||| |||||||| || || ||| | || | ||| |||||| Sbjct 141309 ACAAGATAAGGGGTGAACTTCTTTTGAATGTTCTAGTCAAACAAGTATAGCC-ATCTTCC 141251 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 ||||| || ||||||||||| || | || |||||||||||||||||||| ||| |||| Sbjct 141250 AGTTGCTTACCAGCAAAGATCAGCCTCTGTTGATCAGGAGGAATTCCTTCCTTAACCTGG 141191 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 | || | |||||||| || || | ||| | |||||| |||||| | | |||| Sbjct 141190 CTCTTGGGCTTTACATTTTCTATAGTATCCAGGGATTCAACCTCAAGTATGATGATCTTC 141131 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | || | || |||||||||||||| Sbjct 141130 CCCATAAGGATATTCACAAAAATCTGCAT 141102 >seq11023 Length=25446 Score = 122 bits (134), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||||| | ||| | ||||||||||| |||||||| |||||||| || | ||||| Sbjct 16611 ACCACCACAAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGCAGTCAGA 16670 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || | | |||| ||| | || || ||||||||||| | | |||||||||||||| Sbjct 16671 CAAA-TACAGCCATTTTCTGGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGG 16729 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 | ||||||| |||||||| || || | | |||| || || | || | ||||||| Sbjct 16730 AGTTCCTTCCTTATCCTGGATCTTGG---TCTCATTTTCTATAGTGTCCAAGGGTTCAAT 16786 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | | |||| || |||| ||||| |||||||| ||||| Sbjct 16787 CTTGAGCATGATGATCTTCCCCATTAGGGTTTTCACAAAAATTTGCAT 16834 >seq17266 Length=418531 Score = 111 bits (122), Expect = 5e-19 Identities = 454/708 (64%), Gaps = 21/708 (3%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| || ||||| | || || ||||| || || || | || | ||| ||| Sbjct 58531 GCTATCGGCATCGACCTGGGCACCACTTACTCGTGCGTGGGGGTCTTCCAACATGGCAAG 58590 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || || || || ||||| |||||| | || || || ||||| || || ||| Sbjct 58591 GTGGAGATCATCGCCAACGATCAGGGTAACCGCACCACCCCCAGCTACGTGGCCTTCACC 58650 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||||| | || || || | || || || |||| || || || | ||| Sbjct 58651 GACACCGAGCGCCTCATCGGCGACGCCGCCAAGAACCAAGTGGCCATGAACCCCACAAAC 58710 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434 || | || || || ||||| || || || | ||||| || | | ||| || Sbjct 58711 ACCATCTTCGACGCCAAGCGGCTGATCGGACGGAAGTTC----GAGGACGCCACAGTGCA 58766 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 || ||| | || || | || || | || || | || |||| || || | | Sbjct 58767 GTCCGATATGAAGCACTGGCCGTTCAGAGTGGTG---AGCGAAGGTGGGAAGCCCAAAGT 58823 Query 349495 TGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGG 349553 |||| ||||||||||| || | || || || || ||||| || ||||| || |||| Sbjct 58824 GCAGGTGGAATATAAAGGGGAGATGAAGAC-CTTCTTCCCCGAGGAGATTTCTTCCATGG 58882 Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGA-TGCT 349612 | | ||| |||||||| || || ||||| || | || | | || | || || Sbjct 58883 TCCTCACTAAGATGAAGGAGATCGCCGAAGCCTACCTGGGGGGCA-AGGTGCAGAGCGCG 58941 Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 || || ||||| || |||||||| || || | ||||| || || || ||||| ||| Sbjct 58942 GTCATCACTGTTCCTGCCTATTTCAACGACTCGCAGCGCCAGGCCACCAAGGATGCGGGC 59001 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 | ||| | || | ||||| | | || || ||||| ||||| || || || || || Sbjct 59002 ACCATCACCGGCCTCAATGTGTTGCGCATCATCAATGAGCCCACAGCCGCGGCCATCGCC 59061 Query 349733 TATGGGCTTGATAAAATGAG------TGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 || || || ||||| | | | | | || || || | || || ||||| | Sbjct 59062 TACGGCCTGGATAAGAAGGGCTGCGCGGGCGGCGAGAAGAACGTGCTCATCTTTGACCTG 59121 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAA 349846 || || || || || ||||| || | || || | || || || || ||||| || || Sbjct 59122 GGCGGGGGCACCTTCGATGTGTCCATTCTGACCATCGAGGACGGCATCTTTGAGGTGAAG 59181 Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGT 349894 | || || || || || || || ||||| ||||| || || || ||| Sbjct 59182 TCCACGGCCGGCGACACCCACCTGGGTGGCGAAGACTTCGACAACCGT 59229 >seq434954 Length=317 Score = 107 bits (118), Expect = 6e-18 Identities = 214/310 (69%), Gaps = 8/310 (3%) Strand=Plus/Minus Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATT-TCATCAATGGTTTT 349557 || |||| ||||| ||| | || | ||| ||| | ||||| | || ||||||||| | Sbjct 306 GTGGAATGCAAAGG-GAAGACGAAAAGTTTCTACGCAGAGAAAGTGTCCTCAATGGTTCT 248 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATA--TTTAGGTGAAACAGTAACTGATGCTGTT 349615 || ||||||||||||| |||| || |||| | || || || ||||||| Sbjct 247 GACAAAGGTGAAGGAAATTGCAGAAGTGTACCTTTA--AAAGACTGTTACCAATGCTGTG 190 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | || || |||||||| || ||||| | ||| | |||||||||| |||||| | Sbjct 189 GTCACAGTGCCAGCCTACTTCAATGACTCACAGTGGCAGGCAACAAAAGGTGCTGGAACT 130 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 ||||| || | |||| || ||| || | |||||| | |||||| || || | ||| Sbjct 129 ATTGCTGGCCTCAATGCACTTCAAATTATCAGTGAACCAAATGCTGCTGCTATCACTTAT 70 Query 349736 GGGCTTGATAA-AATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || | ||||| || | | || | |||| | | | | |||||||| || || ||||| Sbjct 69 GGCTTAGATAAGAAAGTGGGAGC-TGAAAGGAGTGTGTTGATTTTTGACTTGGGAGGTGG 11 Query 349795 TACTTTTGAT 349804 ||||||||| Sbjct 10 CACTTTTGAT 1 >seq4083 Length=792805 Score = 104 bits (114), Expect = 7e-17 Identities = 135/183 (74%), Gaps = 9/183 (5%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | ||| || ||| || ||||||| | |||||||||||| ||||| Sbjct 567288 ACCACCACGAAGTCTCAGCACAGGAGGAAGAGT-----CCTTTTGAATATTAG--TCAGA 567340 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || | || | ||| || || || ||||||||||| || |||| ||||| ||| Sbjct 567341 CAAAGTATGGCCCTTTTCCAGCTGCTTCCCAGCAAAGATCAGCTTGTGCT-ATCAGAAGG 567399 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||| ||||| |||||| || || ||||||||||| || | | || | |||||||| Sbjct 567400 AATTCATTCTT-ATCCTGGATCTTGGCTTTTACATTTTCTCTAGTGTCCAAGGGTTCAAC 567458 Query 140690 TTC 140692 || Sbjct 567459 CTC 567461 >seq20595 Length=81188 Score = 102 bits (112), Expect = 2e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| || ||||| ||||| ||||| ||||||||||||||||| || || || | Sbjct 49108 CAGCCTGGACAGCGGCACCGTATGCTACAGCTTCATCTGGGTTTATGCCCCGGGACGGCT 49049 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 | |||||||| || || ||| | || ||| ||||| |||||||||| ||| || |||| Sbjct 49048 CCTTGCCATTGAAGAACTCTTTCACCAGTTGCTGAATCTTTGGAATTCGAGTAGATCCAC 48989 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | || | |||||| |||| | ||| | | | || |||| || ||||| | Sbjct 48988 CAACCAGAACGATTTCATCAATATCAGATTTCTTCAGATCAGAGTCTTCCAAGACTTTCT 48929 Query 183430 CAACAGGGTCCATAGT 183445 ||||| | ||| || Sbjct 48928 GGACAGGTTTCATGGT 48913 Score = 96.9 bits (106), Expect = 1e-14 Identities = 126/174 (72%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || || || || ||||||||||| || ||||| ||| || |||||| || || ||| Sbjct 48371 ACAGCAGCTGCTATTGCATATGGCCTGGATAA---GAGAGAGGGAGAAAAGAACATCCTT 48427 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| | |||||||| || || ||||| || || || || |||| | || | Sbjct 48428 GTGTTTGACCTGGGTGGTGGAACCTTCGATGTCTCTCTTCTCACCATTGACAATGGTGTC 48487 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 |||||||| || ||| ||| ||||| ||||| ||||| ||||| |||||| Sbjct 48488 TTTGAAGTGGTGGCCACTAATGGAGATACTCATCTGGGTGGGGAAGACTTTGAT 48541 Score = 95.1 bits (104), Expect = 4e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 ||||||||| | ||| | |||||||| ||||| || |||||||| |||| || | | Sbjct 48967 ATTGATGAAATCGTTCTGGTTGGTGGATCTACTCGAATTCCAAAGATTCAGCAACTGGTG 49026 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || |||||||| || || || | || || |||||||||||||| ||| Sbjct 49027 AAAGAGTTCTTCAATGGCAAGGAGCCGTCCCGGGGCATAAACCCAGATGAAGCTGTAGCA 49086 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 || ||||| ||||| ||||| Sbjct 49087 TACGGTGCCGCTGTCCAGGC 49106 Score = 87.8 bits (96), Expect = 5e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| ||| ||||||||||||| || || ||||||||||| || ||||| ||||||| Sbjct 48173 ATGCAGTTGTTACTGTACCAGCTTACTTCAATGATGCCCAACGGCAAGCAACCAAAGATG 48232 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 |||||| ||||| ||| | ||||| | || || || ||||| || Sbjct 48233 CTGGCACTATTGCTGGGCTGAATGTCATGAGGATCATCAATGAGCC 48278 >seq948 Length=891322 Score = 102 bits (112), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 54741 AACGGTTAAATAAGGAG-TTAGCTGATATAAATAGTAATCCACCAACAAATTGTTCAGCT 54799 ||||| | |||||||| |||| |||| | |||| || ||| || | ||||| || Sbjct 245594 AACGGATTAATAAGGAACTTAG-TGATTTGGCCCGTAACCCTCCAGCACAATGTTCTGCA 245536 Query 54800 GGAGTAATAGATGATGATATTTTTCATTGGCAAGCAACAATTATGGGACCAGAAGATACC 54859 || | || ||||| || ||||||||||||| ||||||||||||| | || | | Sbjct 245535 GGTCCAGCTGAGGATGACATGTTTCATTGGCAAGACCCAATTATGGGACCTAATGACAGC 245476 Query 54860 CCGTATCAAGGTGGTATATTTGAGTTAAGAATTGATTTTCCACAAGATTATCCATTTAAA 54919 || ||| |||||||| |||| || | |||| ||||||| ||| || || || ||| Sbjct 245475 CCATATGAAGGTGGTGTATTCTTTTTGACAATTCATTTTCCTATAGACTACCCCTTCAAA 245416 Query 54920 CCTCCAAA---TGTAGTTTTTACTACAAAGATTTATCAT 54955 || || || ||| | ||||| |||| ||||||||| Sbjct 245415 CCACCTAAGATTGTTGCATTTACAACAAGAATTTATCAT 245377 >seq507799 Length=571 Score = 98.7 bits (108), Expect = 3e-15 Identities = 227/334 (68%), Gaps = 11/334 (3%) Strand=Plus/Plus Query 349503 AATATAAAGGTGA-ACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTTAGT 349560 |||| ||||| || || | || ||| ||||| || ||| | || ||||||||| | Sbjct 48 AATACAAAGGGGAGACGAGAAG--TTTCTACCCAGAGGAAGTGTCCTCAATGGTTCTGAC 105 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 || ||||| ||| | |||||||| | || | || | || || | | | || Sbjct 106 AAAGATGAA----ATTACAGAAGCATACCTCGGAAAGACTATTACCAATACCATGTTCAC 161 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || ||||| || || ||||| | |||| |||||||||||| |||| | ||||| Sbjct 162 AGTGCCAGCTTACTTCAATGACTCTCAGCAGCAGGCAACAAAAGATACTGGAACTATTGC 221 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | ||||| || ||| || |||||||| | ||||| || ||||| ||||| | Sbjct 222 TGGCCTCAATGTACTTCCAATTATCAATGAACCAATGGCTGCTGCTATTGCTTATGGCTT 281 Query 349741 TGATAA-AATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 ||||| || | || | |||| | | | || |||||||| || || ||||| |||| Sbjct 282 AGATAAGAAGGTCAGAGC-TGAAAGGAGTGTGCTGATTTTTGACTTGGGAGGTGGCACTT 340 Query 349800 TTGATGTATCACTACT-AACACTTGAAGAGGGAA 349832 ||| ||| ||| | || || |||| || |||| Sbjct 341 TTGGTGTGTCAATCCTCAATTATTGAGGATGGAA 374 >seq32185 Length=59521 Score = 96.9 bits (106), Expect = 1e-14 Identities = 130/180 (72%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 140558 ATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTG 140617 ||| || ||||| || || ||||||||||| ||||| ||||||||| | | | || Sbjct 1485 ATTGTAGTCAGACAAAGTATTGCCATCTTCAAGCTGTTTACCAGCAAAGTTCAACCTCTG 1544 Query 140618 CTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATC 140677 |||||||||||| |||||||| |||||||| || | || ||||||| || || | | Sbjct 1545 CTGATCAGGAGGCATTCCTTCCTTATCCTGGATCGTGGC-CTTACATTTTCTATAGTGAC 1603 Query 140678 AGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||||||| | || | |||| || ||| || || |||||||||||||| Sbjct 1604 TAAGGGTTCAACCTTGAGCATGGTGATCTTCCCCATTATGGTCTTCACAAAAATCTGCAT 1663 >seq32429 Length=83959 Score = 95.1 bits (104), Expect = 4e-14 Identities = 80/96 (83%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 140577 CGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTT-GCTGATCAGGAGGAATTCC 140635 || |||||||| || || || ||||||||||| | |||| ||||||||||||||||||| Sbjct 65981 CGGCCATCTTCCAGCTGCTTACCAGCAAAGATCA-ACGTCAGCTGATCAGGAGGAATTCC 65923 Query 140636 TTCTTTATCCTGAATTTTAGCTTTTACATTATCAAT 140671 || ||||||||||| || || |||||||| || || Sbjct 65922 TTTCTTATCCTGAATCTTGGCCTTTACATTTTCTAT 65887 >seq531388 Length=803 Score = 93.3 bits (102), Expect = 1e-13 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||| | ||| | ||||||||||| | ||||| ||||||||||| || |||| Sbjct 124 CCACCATGAGGTCTCAACACAAGATGAAGGATGGACTCCTTTTGAATATTGTAGTCAGGC 65 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || | | |||||||| || || || ||||||||||| | | ||||||||||||||| Sbjct 64 AAAATACAGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 5 Query 140631 ATTC 140634 |||| Sbjct 4 ATTC 1 >seq3787 Length=754536 Score = 93.3 bits (102), Expect = 1e-13 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| | || || ||||| || || ||||| | ||||| ||||||||||||| Sbjct 58274 ATGCTGTGGTCACAGTGCCAGCTTACTTCAATGACTCTCAGCGACAGGCAACAAAAGATG 58215 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | ||||| || | ||||| || |||| || |||||||| || ||||| || | Sbjct 58214 CTGGAACTATTGCTGGCCTCAATGTACTTCGAATTATCAATGAACCAACGGCTGCTGCTA 58155 Query 349728 TTGCATATGGGCTTGATAA 349746 |||| ||||| | ||||| Sbjct 58154 TTGCGTATGGCTTAGATAA 58136 >seq1993 Length=674655 Score = 89.7 bits (98), Expect = 2e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 378237 ACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATG 378296 |||||| | | ||| ||||| || || ||||| | ||| | || || ||||| ||||| Sbjct 48415 ACCAGTCTCAGCAGTCTTAACAGCTGTGTCAATGAGACCTTCTCGTCCTCCCATGGCATG 48356 Query 378297 GAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGC 378356 |||||| || ||||| || || || ||| | | ||||| | || | ||| |||| ||| Sbjct 48355 GAAGAAGAACTCAGTGGGTGTGAGACCAGCCAAGTATGAATTTTCTACAAAGCCTC-TGC 48297 Query 378357 GC-CTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATG 378415 | | || || ||||| || || | ||||| | || |||| || ||| ||| ||| Sbjct 48296 TCTCAGGACCATAATCATCCTTGATAAAGTGAGGAAGAGTCCGATGCTTAAATCCAAATG 48237 Query 378416 GAATTCGTTTTCCATCAACATTCTGTTGACC 378446 | || || || || || || ||||| || || Sbjct 48236 GGATCCGCTTGCCCTCTACGTTCTGCTGCCC 48206 >seq1649 Length=186589 Score = 86.0 bits (94), Expect = 2e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 |||||||| || || ||||| || || || |||||||| || || || ||||||||||| Sbjct 59855 TTTTGAATGTTGTAGTCAGACAAGGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATC 59796 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCT 140636 | | ||||||||||||||||||||| Sbjct 59795 AACCTCTGCTGATCAGGAGGAATTCCT 59769 >seq56748 Length=2438 Score = 84.2 bits (92), Expect = 7e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 54815 GATATTTTTCATTGGCAAGCAACAATTATGGGACCAGAAGATACCCCGTATCAAGGTGGT 54874 ||||| ||||||||||| || ||||| ||||| ||| | |||| ||| ||||| ||| | Sbjct 1705 GATATGTTTCATTGGCAGGCTACAATAATGGGGCCAAATGATAGCCCCTATCAGGGTAGA 1764 Query 54875 ATATTTGAGTTAAGAATTGATTTTCCACAAGATTATCCATTTAAACCTCCAAATGTAGTT 54934 || || || | |||| |||| ||| | |||| | ||| ||| || || || | Sbjct 1765 GTACTTTTCTTGATAATTCATTTCCCAACATATTACCTATTCGAACTACCTAAGGTTGAA 1824 Query 54935 TTTACTACAAAGATTTATCAT 54955 ||||| |||| ||||||||| Sbjct 1825 TTTACAACAAGAATTTATCAT 1845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1504389652347087