Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq7634 82.4 8e-11 >seq7634 Length=216425 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCG-TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| |||| ||||||| |||||||||||||| || || | || |||||||| Sbjct 206348 GCCTTTGC-TGCGGTGGAAGGGATCTTCTTCTCTGGTTCTTTTGCATCGATATTCTGGCT 206406 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 ||| || || || || ||||| ||||| | || ||||| ||||| ||| | | ||||| Sbjct 206407 CAAGAAACGGGGACTGATGCCAGGCCTTACGTTTTCCAATGAGCTTATTAGCAGAGACGA 206466 Query 60110 GG 60111 || Sbjct 206467 GG 206468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544687670183760