Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9385 107 2e-18 seq56394 96.9 4e-15 seq4069 96.9 4e-15 seq1495 87.8 2e-12 >seq9385 Length=230659 Score = 107 bits (118), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| ||||| || ||||| || | || ||||||| | Sbjct 28331 ATGCAGATTTTTGTGAAGACCCTTACAGGGAAGACCATCATGCTCCAGGTTGAACCCTCG 28272 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || ||||| ||| ||| ||||||||| || || Sbjct 28271 GACACTATAGAAACTGGAAAGGCCAACATCCAGGATAAGAAGG-AATTCCTCCTGATGAG 28213 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||||||||| || || |||| | ||| | | ||||| || Sbjct 28212 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCATACTTTGTCTGACTACAAC 28153 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | ||||||||||| || |||||||| Sbjct 28152 ATTCAAAAGGAATCTACCCTTCATCT 28127 >seq56394 Length=146557 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || ||||| || | |||| || |||| || | ||||||||||| || Sbjct 141099 ATGATGCAGATTTTTGTGAATATCCTTATGGGGAAGATCATCATACTTGAGGTTGAATCC 141158 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| || | |||| | ||| | || | |||| ||||| ||||||||||| || Sbjct 141159 CTGGATACTATAGAAAATGTAAAGCCCAAGAGCCAGGTTAAGGAAGGAATTCCTCCTGAT 141218 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || ||| | || || ||||||||||||||||| || |||| || | | ||||| Sbjct 141219 CAACAGAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGCTATA-CTTGTTTGACTAG 141277 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTC 27625 || | |||||| | | ||| | | |||| || ||| | |||| Sbjct 141278 AACATTCAAAAGAAGTTCACCCCTTATCTTGTATTGAGCCTTC 141320 >seq4069 Length=665586 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 27435 CAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAAT 27494 |||||| |||||||||||| | |||| ||| | || || ||| | ||||| || || Sbjct 312465 CAAGACCATTACTCTTGAGATCCAGTCCAATGACATCA-TGAGAATGTCAAGGCCAAGAT 312523 Query 27495 TCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 || ||||||| | || || || ||||||||| | || || ||||| || || || || Sbjct 312524 CCAACACAAGGAAGTCATCCCACCTGACCAGCAGAGGCTGATATTTGCCGGCAAACACCT 312583 Query 27555 CGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 ||||||| | ||||| | |||| || |||| || || ||||| | | || || Sbjct 312584 GGAGGATGGCTGCACCCTGTCCTACTACAACATCCAGAAAGAGTCCACCTTGTACCTGGT 312643 Query 27615 CTTGCGTCTTCGCGGTGG 27632 |||||||| || ||||| Sbjct 312644 GTTGCGTCTGCGAGGTGG 312661 >seq1495 Length=642193 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 || ||||| ||| |||||||||||||| ||||| ||||| | |||| ||||||||| Sbjct 168181 GCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCTGGATCATTTGCTGCTATATTCTGGCTA 168240 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || ||| | ||||| ||||| || ||| | ||||| || || || ||| Sbjct 168241 AAGAAGAGAGGCCTCATGCCTGGACTGACCTTTTCAAATGAACTCATC 168288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566320872014480