Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4069 96.9 3e-15 >seq4069 Length=665586 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 7/207 (3%) Strand=Plus/Plus Query 27017 CAAGTCTATTACTCTTGAAGTGGAACC-GTCCGACTCGAT--TGAGATGGTCAAACAAAA 27073 |||| | ||||||||||| || || |||| | || ||||| ||||| || Sbjct 312465 CAAGACCATTACTCTTGA----GATCCAGTCCAATGACATCATGAGAATGTCAAGGCCAA 312520 Query 27074 AATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACA 27133 || ||| |||| |||| ||| ||||| || || ||| | | |||| ||||||||||| Sbjct 312521 GATCCAACACAAGGAAGTCATCCCACCTGACCAGCAGAGGCTGATATTTGCCGGCAAACA 312580 Query 27134 ATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTT 27193 |||| || | | ||| | ||| | |||||||| || || ||||| ||||| | | Sbjct 312581 CCTGGAGGATGGCTGCACCCTGTCCTACTACAACATCCAGAAAGAGTCCACCTTGTACCT 312640 Query 27194 GGTTTTGCGTTTGCGGGGTGGCATAAC 27220 ||| |||||| |||| |||||||| || Sbjct 312641 GGTGTTGCGTCTGCGAGGTGGCATCAC 312667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431955226605197