Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq42693 145 7e-30 >seq42693 Length=180072 Score = 145 bits (160), Expect = 7e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 || ||| || |||||||| ||||||||||| || || ||||||||||| ||||| || | Sbjct 13030 GATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGCACGCCCAG 13089 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| || | || || |||||||| || |||||||||||| | || ||||| Sbjct 13090 ACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACCACATAGAA 13149 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||| ||||||| ||||| || || | |||||||| || ||||| Sbjct 13150 TTGACAGAGGGCATGGCAAGGAGGCAATGCCATCAGGGGAAGATC 13194 Score = 145 bits (160), Expect = 7e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| | || || ||||| ||||||| |||||||| || | |||| Sbjct 13194 GATCTTCCCCTGATGGCATTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGTGAAT 13135 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||| || |||||||| || || | || ||||| ||||| | || ||||| ||| Sbjct 13134 GGGGAGCTATCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCCTTC 13075 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||||||| || || ||||||||||| |||||||| || ||| || Sbjct 13074 AACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACATATC 13030 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 || |||||||| || ||||| | ||| ||||||||||||||||| || | |||||| Sbjct 13907 TTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 13966 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTC 6882 ||||| | ||||||||||| ||| |||||||| || || Sbjct 13967 ATCACTTTTTGCAGCTGGTCTATTCCTTGTCCCGAGTAATC 14007 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 || || |||||||| ||| ||||||||||| | ||||| |||||| | || ||| Sbjct 14007 GATTACTCGGGACAAGGAATAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAAC 13948 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 |||||||||||||| ||| | ||||| || |||||||| || Sbjct 13947 CCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAA 13907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445126642016880