Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq13838 165 7e-36 seq13266 122 7e-23 seq42693 95.1 1e-14 >seq13838 Length=123503 Score = 165 bits (182), Expect = 7e-36 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| ||| |||||| |||||||||||||||| ||||| || || Sbjct 16675 ATTGTGACATGGCAGAAAAAGAAAGCAGTGAGCCCAGAAAACATGGTCACTTACAGCAAA 16734 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 ||| || ||||| | ||||| || |||||||| | ||| ||| | || || || ||| Sbjct 16735 ACCCATGGCGTTGTAATCCAGCCTGCCTACAAAGACAGAATAAACGTCACCGAACTGGGA 16794 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||| ||| || |||||||||||||||||| |||| ||||| || ||||||| | Sbjct 16795 CTCTGGAACTCAAGCATCACCTTCTGGAACACAACACTGGAGGATGAGGGCTGCTACATG 16854 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || ||||| ||||| ||| ||||| | || || | || || || ||||| Sbjct 16855 TGTCTCTTCAACACGTTTGGCTCTAGGAAGGTCTCGGGGACAGCCTGCCTTACCCT 16910 >seq13266 Length=432576 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 248201 GTGGTAGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 248260 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| || | || | |||| || |||||| Sbjct 248261 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 248320 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 248321 ATCGCCCTGTGGATGACTGA 248340 >seq42693 Length=180072 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 || ||||||||||| || | || | |||||||| | || || || || ||||||||| Sbjct 13034 TGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGCACGCCCAGACCC 13093 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGA 118665 || ||| |||| |||||||| | |||||||| |||||||| || | ||||| || ||| Sbjct 13094 ATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACCACATAGAATTGA 13153 Query 118666 CTTATGATGTGACATGGAGGCA 118687 | | | || || ||||||| Sbjct 13154 CAGAGGGCATGGCAAGGAGGCA 13175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411649869922756