Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq9385 118 2e-21 seq11023 111 4e-19 seq56394 109 1e-18 seq4015 96.9 8e-15 seq57136 91.5 3e-13 seq34566 91.5 3e-13 seq21687 86.0 1e-11 seq24034 84.2 5e-11 seq6592 84.2 5e-11 >seq9385 Length=230659 Score = 118 bits (130), Expect = 2e-21 Identities = 151/207 (73%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 210908 AAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967 ||| ||||| || || || ||||| ||||| || || | | || ||||||||||| Sbjct 28126 AAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAG 28185 Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 |||||| || || ||||| | | || | |||||||||| ||||| ||| |||||||| Sbjct 28186 CTGCTTACCAGCAAAGATCAACCTCTGCTCATCAGGAGGAATTCCTT-CTTATCCTGGAT 28244 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 || || | |||| || ||||| ||| |||||||| ||| |||| ||||| || Sbjct 28245 GTTGGCCTTTCCAGTTTCTATAGTGTCCGAGGGTTCAACCTGGAGCATGATGGTCTTCCC 28304 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| | |||||| Sbjct 28305 TGTAAGGGTCTTCACAAAAATCTGCAT 28331 >seq11023 Length=25446 Score = 111 bits (122), Expect = 4e-19 Identities = 161/223 (72%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCG-CAAGGG 210951 || |||||| | ||||| ||||| || ||||| ||||| ||||| | || | ||| Sbjct 16617 ACAAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGCAGTCAGACAAA-- 16674 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||| ||| ||||||| || || ||||| | | || || ||||||||| || Sbjct 16675 TACAGCCATTTTCTGGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAGTTC 16734 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 ||||||| ||||||||| || || ||| ||||| || ||||| || ||||| || || Sbjct 16735 CTTCCTTATCCTGGATC-TTGGTCTCA--TTTTCTATAGTGTCCAAGGGTTCAATCTTGA 16791 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | |||| |||| ||| | || || || ||||| | ||||| Sbjct 16792 GCATGATGATCTTCCCCATTAGGGTTTTCACAAAAATTTGCAT 16834 >seq56394 Length=146557 Score = 109 bits (120), Expect = 1e-18 Identities = 162/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCG-CAA 210948 |||| |||| || | ||||| | | | ||| ||| ||||| ||||| || || ||| Sbjct 141324 TCAA-GAAGGCTCAATACAAGATAAGGGGTGAACTTCTTTTGAATGTTCTAGTCAAACAA 141266 Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | | ||||||||||| ||||| || || ||||| || | ||||| |||||||||| Sbjct 141265 GTATAG--CCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGATCAGGAGGAA 141208 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 ||||||||| ||||| |||| | || || ||||| || || || | |||||||| Sbjct 141207 TTCCTTCCTTAACCTGGCTCTTGGGCTTTACATTTTCTATAGTATCCAGGGATTCAACCT 141148 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || |||| |||| ||| | || | || ||||| | |||||| Sbjct 141147 CAAGTATGATGATCTTCCCCATAAGGATATTCACAAAAATCTGCAT 141102 >seq4015 Length=481171 Score = 96.9 bits (106), Expect = 8e-15 Identities = 141/193 (73%), Gaps = 5/193 (3%) Strand=Plus/Minus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 ||||| | | ||||| ||||| |||| ||||| || ||||| | || | || | | Sbjct 114294 GAAGTATCAACACAAGATGAAGGATGGAATCTTTCTGAATGTTGTGGTCAGACAGATTAC 114235 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTT-GTTGGTCAGGAGGAACTCCT 211013 ||||||||||||| ||| || || || ||| || | | ||||||||||||| | || Sbjct 114234 AGCCATCTTCCAGCTTCTTACCAGCAAA-ATACAGCCTCAGCTGGTCAGGAGGAAATTCT 114176 Query 211014 -TCCTTGTCCTGGATCT-TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 ||||| |||||||||| ||||| || ||||| || ||||| ||| ||||||| || Sbjct 114175 CTCCTTATCCTGGATCTCAGTGTTT-ACATTTTCTATAGTGTCTGAGACTTCAACCATGA 114117 Query 211072 GAGTGATCGTCTT 211084 | || | ||||| Sbjct 114116 GTGTAAGGGTCTT 114104 >seq57136 Length=63839 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 |||| |||| || ||||| || ||||||| || || | | | | ||||||||| Sbjct 37237 CAAGATGAAAGGTAGACTCCATTGGGATGTTGTAGTCAGACAAAGCACGGCCATCTTCCG 37178 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 ||||||| ||||| |||| | | || ||||||||||||||||||| | ||| | Sbjct 37177 GCTGCTTACCTGCAGAGATCTGCCTCTGCCAATCAGGAGGAACTCCTTCCTCATGCTGCA 37118 Query 211027 TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTC 211086 ||| || |||||| | ||||| || ||||||| ||| |||| | ||| | Sbjct 37117 TCTCGGCCTTTCTGTTTTCTACGGTGTTCAAGGGTTCAACCCTGAGCATGATGGCCTTCC 37058 Query 211087 CCGTGAGAGTCTTTACAAACACCTGCAT 211114 || | || ||||| ||||| | |||||| Sbjct 37057 CCATAAGGGTCTTCACAAAAATCTGCAT 37030 >seq34566 Length=168407 Score = 91.5 bits (100), Expect = 3e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || | ||||| |||||||| ||||| | ||| | |||||| Sbjct 100391 AGGACCAGGTGCAGGGTCAATTCTTTCTGGATGTTGTAATCAGAGAGGCTGTGGCCATCT 100450 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAG-GAGGAACTCCTTCCTTGTC 211021 ||||||||||||||||| ||||| | | || ||||||| |||| | || || || || Sbjct 100451 TCCAGCTGCTTGCCTGCAAAGATGGGCCTCTGCTGGTCAGAGAGG-ATGCCCTCTTTATC 100509 Query 211022 CTGGATCTT 211030 ||||||||| Sbjct 100510 CTGGATCTT 100518 >seq21687 Length=627521 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||| |||||||| || || || |||||||||||| | || ||||| Sbjct 154792 CCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCA 154851 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| ||||| ||||| || ||||| || || | |||||| || Sbjct 154852 AGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 154898 >seq24034 Length=230171 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | |||| | |||||| Sbjct 142237 AGGACCAGGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGAGCAGCCATCT 142296 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAG 210988 ||||||||||||||||| ||||| || Sbjct 142297 TCCAGCTGCTTGCCTGCAAAGATCAG 142322 >seq6592 Length=165981 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 210997 GGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAG 211056 ||||||| || | ||||||||||| |||||||| | || || |||||||||||| Sbjct 157120 GGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTGGACATTCTCGATGGTGTCAC 157061 Query 211057 AGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 | | || ||||| |||| ||| ||||| | || || ||||| || || |||||||| | Sbjct 157060 TGGTCTCGACCTCAAGAGCGATGGTCTTGGCTGTCAGGGTCTTCACGAAGACCTGCATGT 157001 Query 211117 T 211117 | Sbjct 157000 T 157000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150840594356585