Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3413 93.3 1e-13 >seq3413 Length=465778 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/178 (72%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 7553 AACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGC 7612 || |||| || |||||| | || | |||||||||||||| ||||||||| | | || | Sbjct 39129 AAATTTATAATGTTATTGTCACTGGCCATGCCTTTGTTATAATTTTCTTTATAGCAATAC 39070 Query 7613 CGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATA 7672 | | || || || ||||| ||||| ||| | | || |||| ||||| || ||||||| Sbjct 39069 CAATAATAATTGGAGGTTTTGGAAACTGACTTATACCACTAATAATTGGAGCCCCTGATA 39010 Query 7673 TGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 | || |||| | | || ||||| || |||||| | || || || || || |||| Sbjct 39009 TAGCATTTCTACAAATAAATAATATGAGCTTTTGACTTCTTCC-CCATCATTTCTTCT 38953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1183980457262526