Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1495 91.5 1e-13 seq7634 87.8 2e-12 >seq1495 Length=642193 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| |||||||| ||||| || || ||||||||||||||||| || || | || || || Sbjct 157415 TACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGGGAGAT 157356 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||| |||| ||||||| ||||| | |||||||| || | || || | ||| ||||| Sbjct 157355 AAAATACTTCTCGTCAGATTTAAGCCTGTTCCAGTGAGGGAGGTCCTTTGATAAGTCAAC 157296 Score = 86.0 bits (94), Expect = 5e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 4252 CAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAA 4311 ||||| || || || || ||||| || || |||||||| ||||| ||||||||||||| Sbjct 175880 CAAATCGCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAA 175821 Query 4312 TATTTTCCATAAAATCAAACGGATT 4336 | || |||||||||||||| ||||| Sbjct 175820 TGTTCTCCATAAAATCAAAGGGATT 175796 >seq7634 Length=216425 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| || || || |||||||| | || ||||| | || | || || Sbjct 206466 TCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCTGGCATCAGTCCCCGTTTCTTG 206407 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||| ||||| || ||||| || || ||||| || Sbjct 206406 AGCCAGAATATCGATGCAAAAGAACCAGAGAAGAAGATCCCTTCCACCGCAGCAAAGGCC 206347 Query 4692 ACTAATCG 4699 || | ||| Sbjct 206346 ACAACTCG 206339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424136917411457