Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq42693 118 8e-22 >seq42693 Length=180072 Score = 118 bits (130), Expect = 8e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| || || |||||||| ||||| |||| |||||||| ||||| ||||| Sbjct 13022 AGGCCCGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 13081 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||| || || ||||||||||| ||||| || || ||||| |||| Sbjct 13082 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACC 13141 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || || ||||| | ||| ||||| ||||| | ||||| ||| Sbjct 13142 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAATGCCATCAGG 13186 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| ||| |||| |||||||| ||||||||||| ||||| || || || || |||||||| Sbjct 18889 CATATCCTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTC 18948 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || | | | ||| ||| |||||||||| |||| ||| || ||||| || Sbjct 18949 CCCTTCCTGTCGGGCAGAGAATCCCAAGCTGTCCAAAAAATCTCGGGACCCATTGGCATC 19008 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||| || | || ||||| ||| | ||||| | |||||||| || Sbjct 19009 CCAAATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCC 19056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 366986984109899