Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4803 118 1e-21 seq554019 104 3e-17 >seq4803 Length=331686 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||||||||| |||||||| || |||||||| || || || | || Sbjct 153628 TGAAATTCTCCTGACAATACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 153569 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 153568 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 153509 Query 77247 TTTCTGAGACCAT 77259 ||||| | |||| Sbjct 153508 TTTCTTATCCCAT 153496 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| ||||| || || |||||| || | || || || ||||| || | Sbjct 157528 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGTTCAGCAATATGGATGT 157469 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| ||||||||||||||||| ||||| || || ||||| || | || |||| Sbjct 157468 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 157409 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | ||| || | | ||| || | ||||| |||| Sbjct 157408 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 157358 Score = 104 bits (114), Expect = 3e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 ||||| | ||| |||||||| || || | || || ||||||||||| || ||||||| Sbjct 150270 GATCCCTCATACGTTTCATAGGGGCCATGCTCCTTG-GCTAGTTCACAGCTGGCTTCCAG 150212 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 ||||| |||||||| ||||| || || | |||||| | || ||||| || || Sbjct 150211 GGCTCCATAATAAATGGTTTCAAAGATTTGCTTATTTAATAACTGGGCTTCTGGGCTCTC 150152 Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 ||| ||||| | || || || |||||||||| ||||| || ||||| ||||| || Sbjct 150151 AAAGGGATATCTCATCAGGATGAAAGCATCTGCTAGACCCTGTACCCCAATTCCAATGGG 150092 Query 77534 TCTATGTCTCTTATTGGAAAT 77554 | ||| | ||||| || || Sbjct 150091 CCGATGGCGTTTATTTGATAT 150071 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| || || || ||||| || |||||||| || ||| Sbjct 140781 GTCCCAGCATTGAAGAGAGTAGGAGAGGCGTGAGTGAACCACTTCTCAGAAAGCAGGTTG 140722 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || || || || ||||| || || | || | ||||||| Sbjct 140721 TAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 140662 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 140661 ATATGCTGTGGTCTTTCAGCC 140641 >seq554019 Length=1715 Score = 104 bits (114), Expect = 3e-17 Identities = 220/323 (68%), Gaps = 4/323 (1%) Strand=Plus/Plus Query 180918 TTGGCTGATGAATTGTTCAACAGGGCATCACTTCAGTTAAATGAAACATTCAACTTTACT 180977 ||||| | || | | ||||||| | || | |||||| | ||||| ||| ||||||| Sbjct 1393 TTGGCAGCTGCAGTTTTCAACAAGACAGAATTTCAGTATGAGGAAACTTTCCACTTTACC 1452 Query 180978 AGATCTGTCAATGTTAAAGTTACAGCTAGTTCAGGTAAACAACTAAGAACACGTCTTAAG 181037 ||||| | ||||| |||||| | | ||||| ||||| ||| ||| |||| | || Sbjct 1453 AGATCCGCATATGTTGAAGTTATATCGCTTTCAGCAAAACACCTACGAAAACGTGTCAAA 1512 Query 181038 CAACAACTTCCTTCTACAGTAGCATCTTTTGCCAATACAGATGGTGGATATTTGTTCATT 181097 | | || ||| || || | |||| || || || ||||| ||||||||||||||| Sbjct 1513 GAGCTCCTCCCTCGAACTGTGTCTGCTTTCGCAAACACGGATGGAGGATATTTGTTCATT 1572 Query 181098 GGGTTGGATGGTAAGACGAATAAAGTAATTGGATTCAATGCTAGTCAAGA-ATACATTGA 181156 || ||||| | || || | || | ||||| || || || || |||| || ||| Sbjct 1573 GGTTTGGACAGCAAAACCCAGCAAATTATTGGTTTTAAAGC-AGAGAAGAGCGACCTTG- 1630 Query 181157 TATG-ATAGGCTATGAGATAGAAAAGCGTATTAAAAGACTTCATGTAGTACACTTTTGTG 181215 | || ||| ||| ||||||||| | || | || | ||| | ||||| |||| Sbjct 1631 TGTGTCTAGAGAGTGAAATAGAAAAGTGCATCCGACAGCTGCCTGTCATCCACTTCTGTG 1690 Query 181216 AGAAAAAAGAGGATATCAAGTAC 181238 | | || ||| | ||||||||| Sbjct 1691 AAGAGAAGGAGAAGATCAAGTAC 1713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689809339926560