Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4803 123 4e-23 seq1495 111 2e-19 seq554019 98.7 1e-15 seq504663 84.2 3e-11 >seq4803 Length=331686 Score = 123 bits (136), Expect = 4e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||||||||| |||||||| || |||||||| || || || | || Sbjct 153628 TGAAATTCTCCTGACAATACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 153569 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 153568 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 153509 Query 75842 TTTCTGAGACCAT 75854 ||||| | |||| Sbjct 153508 TTTCTTATCCCAT 153496 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| || || |||||| || | || || || ||||| || | Sbjct 157528 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGTTCAGCAATATGGATGT 157469 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| ||||||||||||||||| ||||| || || ||||| || | || |||| Sbjct 157468 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 157409 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | ||| || | | ||| || | ||||| |||| Sbjct 157408 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 157358 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | |||||||| || ||||||||||| || |||||||| || ||| Sbjct 140781 GTCCCAGCATTGAAGAGAGTAGGAGAGGCGTGAGTGAACCACTTCTCAGAAAGCAGGTTG 140722 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||||||| | || || ||||| || ||||| || |||| || | ||||||| Sbjct 140721 TAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 140662 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 140661 ATATGCTGTGGTCTTTC 140645 Score = 95.1 bits (104), Expect = 2e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 ||||| | ||| ||||| || | || | || | |||||||| || || || || | Sbjct 150270 GATCCCTCATACGTTTCATAGGGGCCATGCTCCTTGGCTAGTTCACAGCTGGCTTCCAGG 150211 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATC 76068 || || |||||||| ||||| || || | |||||| || | || | ||||| | || || Sbjct 150210 GCTCCATAATAAATGGTTTCAAAGATTTGCTTATTTAATAACTGG-GCTTCTGGGCTCTC 150152 Query 76069 AAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128 ||| ||||| | || || || ||||||||||| ||||| || ||||| ||||| || Sbjct 150151 AAAGGGATATCTCATCAGGATGAAAGCATCTGCTAGACCCTGTACCCCAATTCCAATGGG 150092 Query 76129 TCTATGTCTCTTATTGGAAAT 76149 | ||| | ||||| || || Sbjct 150091 CCGATGGCGTTTATTTGATAT 150071 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || || || || Sbjct 132103 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGATG 132044 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| ||||||| ||| | || || || | || || | | Sbjct 132043 GCATAGTCAGGGTGCTTCGTAGTCAAGGTGGCCGCTGTCTCGGCAGCCAGGGTGTCCAGT 131984 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || || |||| || |||||||| |||||||||| Sbjct 131983 TCCACTGTGGTGACCCCACTATACAGGCCTTGAATTACTTTCATGG 131938 >seq1495 Length=642193 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 ||||||| || || || | ||| || ||||| || || |||||||| || || | ||| | Sbjct 168301 CTTCATCCCTGCTGATGAGTTCATTTGAAAAGGTCAGTCCAGGCATGAGGCCTCTCTTCT 168242 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || || |||||||| ||||| || ||||||||||| || || | Sbjct 168241 TTAGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 168182 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| ||||| Sbjct 168181 CCACCACTCTTTCTCC 168166 >seq554019 Length=1715 Score = 98.7 bits (108), Expect = 1e-15 Identities = 207/306 (68%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 179051 TTCAACAGGGCATCACTTCAGGCTAATGAATCATTCAACTTTACTAGATCTGTCAATGTT 179110 ||||||| | || | ||||| | | ||| | ||| ||||||| ||||| | ||||| Sbjct 1408 TTCAACAAGACAGAATTTCAGTATGAGGAAACTTTCCACTTTACCAGATCCGCATATGTT 1467 Query 179111 AAAGTTACATCTATTTCGGGTAAACAACTAAGAACACGTCTAAAGCAACAACTTCCTTCT 179170 |||||| ||| |||| | ||||| ||| ||| |||| | || | | || ||| Sbjct 1468 GAAGTTATATCGCTTTCAGCAAAACACCTACGAAAACGTGTCAAAGAGCTCCTCCCTCGA 1527 Query 179171 ACAGTCGCATCTTTTGCTAACACAGATGGTGGGTATTTGTTCATTGGATTGGATGGAAAA 179230 || || | |||| || ||||| ||||| || |||||||||||||| ||||| | ||| Sbjct 1528 ACTGTGTCTGCTTTCGCAAACACGGATGGAGGATATTTGTTCATTGGTTTGGACAGCAAA 1587 Query 179231 ACAAATAAAGTAATTGGATTCAATGCGGGTAAAGAATACATTGATATGATAAGTCA-TGA 179289 || | || | ||||| || || || | || || ||| | || || | ||| Sbjct 1588 ACCCAGCAAATTATTGGTTTTAAAGCAGAGAAGAGCGACCTTG-TGTGTCTAGAGAGTGA 1646 Query 179290 GATAGAAAAACGTATTAGAGGACTTCATGTTGTACACTTTTGTGAGAAAAAAGAGGATAT 179349 |||||||| | || || || | ||| | ||||| ||||| | || ||| | || Sbjct 1647 AATAGAAAAGTGCATCCGACAGCTGCCTGTCATCCACTTCTGTGAAGAGAAGGAGAAGAT 1706 Query 179350 CAAGTA 179355 |||||| Sbjct 1707 CAAGTA 1712 >seq504663 Length=551 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||||| |||||||| |||| |||||| | Sbjct 396 TACCTCTTCTGCTGTCCAGAAAGATGCCTGTGCTTGCTTATACATTCTCCAGATATCAGG 455 Query 47187 ATATTGGATCGGAAAAATAACAAA 47210 ||| ||||| ||||| || ||||| Sbjct 456 ATACTGGATTGGAAAGATGACAAA 479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707947165433280