Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq9385 113 9e-20 seq4069 98.7 2e-15 seq2686 98.7 2e-15 seq21687 91.5 3e-13 seq7996 89.7 1e-12 seq4060 89.7 1e-12 seq3754 89.7 1e-12 seq7921 87.8 4e-12 seq238377 86.0 1e-11 seq8426 84.2 5e-11 >seq9385 Length=230659 Score = 113 bits (124), Expect = 9e-20 Identities = 141/192 (73%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||| ||||||||||||| | || ||||||| || || || || || ||||| Sbjct 28141 TTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAGCTGCTTACCAGCAAA 28200 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | || | ||| ||||| || || || || ||||| || || ||| | || Sbjct 28201 GATCAACCTCTGCTCATCAGGAGGAATTCCTTC-TTATCCTGGATGTTGGCCTTTCCAGT 28259 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || ||||||||||| | ||| || | ||| |||| ||||| || || | ||||| || Sbjct 28260 TTCTATAGTGTCCGAGGGTTCAACCTGGAGCATGATGGTCTTCCCTGTAAGGGTCTTCAC 28319 Query 283088 GAATATCTGCAT 283099 || |||||||| Sbjct 28320 AAAAATCTGCAT 28331 >seq4069 Length=665586 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || | ||||| | || ||| ||||| ||||||||||||| | Sbjct 312661 CCACCTCGCAGACGCAACACCAGGTACAAGGTGGACTCTTTCTGGATGTTGTAGTAGGAC 312602 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||| ||||||||| || ||||| |||||||| |||| | || |||||| || Sbjct 312601 AGGGTGCAGCCATCCTCCAGGTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 312542 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || | ||||||| ||||||||| || || || Sbjct 312541 ATGACTTCCTTGTGTTGGATCTTGGCCTTGAC 312510 >seq2686 Length=99236 Score = 98.7 bits (108), Expect = 2e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 21704 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 21646 >seq21687 Length=627521 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||| ||||||||||||||||| || || || | ||||| ||||| | ||||| || Sbjct 154791 ACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTC 154850 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 |||||||| ||||| ||||||| ||||| ||||| |||||||| || Sbjct 154851 AAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 154898 >seq7996 Length=633783 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 182904 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 182846 >seq4060 Length=204886 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 164735 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 164793 >seq3754 Length=957108 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 393455 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 393397 >seq7921 Length=192797 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 |||||||| || | | || ||| || |||||||| || |||| | |||||||||| Sbjct 114618 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTACCAAACTGA 114559 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899 || |||| | ||| |||| |||||||| || || || ||| |||||||| |||||| Sbjct 114558 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 114499 Query 273900 ATAGTC 273905 |||||| Sbjct 114498 ATAGTC 114493 >seq238377 Length=962 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGAT 168812 |||||| |||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 110 TTAGTAAAGTGGTGAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCGGTTCCCCAAT 51 >seq8426 Length=365948 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 || || |||||||| | ||| || |||||||||||| |||||||| | |||||||||| Sbjct 48621 GTAAAGATGTACCTAGGACTAGCCGAGTCCTTGCCACCATGCAGCCTGGTACCAAACTGA 48680 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895 || |||| ||| ||| | || |||||||| || ||| |||||||| ||| Sbjct 48681 CCAATGGGCTGTAAAAGGTTCAAATTATTGCTACCCACAAAATTCTGAGCCAAATT 48736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1039233821849366