Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq11023 95.1 9e-15 seq9385 95.1 9e-15 >seq11023 Length=25446 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| || ||||||||| |||||| | || | | | || Sbjct 16621 AGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGCAGTCAGACAAATACAGC 16680 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | | || ||||||| || ||||||||||| | ||||||||| | ||| |||||| Sbjct 16681 -CATTTTCTGGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAGTTCCTTCC 16739 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| | ||| || |||| ||||| || ||| | || | | | Sbjct 16740 TTATCCTGGATCTT-GGTCTCA--TTTTCTATAGTGTCCAAGGGTTCAATCTTGAGCATG 16796 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342 || |||| ||| | ||||| ||||| || |||||||| |||| Sbjct 16797 ATGATCTTCCCCATTAGGGTTTTCACAAAAATTTGCATCATGT 16839 >seq9385 Length=230659 Score = 95.1 bits (104), Expect = 9e-15 Identities = 140/194 (72%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGA--GT-TGGCGCTCGTCGTCCAGCTGCTTCCCGGCA 44203 |||||||| |||||||| || | | || |||| | || ||||||||||| || ||| Sbjct 28142 TCCTTTTGAATGTTGTAGTCAGACAAAGTATGGC---CATCTTCCAGCTGCTTACCAGCA 28198 Query 44204 AAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAAT 44263 |||||||| | ||||| ||| | ||| | ||||| || ||| || || ||| Sbjct 28199 AAGATCAACCTCTGCTCATCAGGAGGAATTCCTTC-TTATCCTGGATGTTGGCCTTTCCA 28257 Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 ||| |||| ||||| | || ||| |||| | | | || ||||| || || ||||||||| Sbjct 28258 GTTTCTATAGTGTCCGAGGGTTCAACCTGGAGCATGATGGTCTTCCCTGTAAGGGTCTTC 28317 Query 44324 ACGAAGATTTGCAT 44337 || || || ||||| Sbjct 28318 ACAAAAATCTGCAT 28331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357535093239093