Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq19169 156 6e-33 seq4083 89.7 7e-13 >seq19169 Length=151675 Score = 156 bits (172), Expect = 6e-33 Identities = 206/286 (72%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||||||||| || ||| | |||| ||||||||||| | || | ||||||||| Sbjct 20351 AAGGGACACCCCTTCACATTGTTGCAGATGAGAGACTGAATGGAGGCAGTGTTGACGATC 20292 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || ||||| ||||| ||||||||||| ||||||||||| || || |||||| Sbjct 20291 TTAAAACCCACTTCTCCTCCGAAGGTGCTCGGCTTCCAGTATTGAGGAGAACAGATGGGA 20232 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | || || || || || | || | ||| |||| || ||| Sbjct 20231 TTACCCATAAGTCCTTTCAAAGAAAATGGCGCTCCAAGTTCTACCATGGTCTCCCCAAAG 20172 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | || || |||||||| |||| | ||| ||||| |||| || |||| | Sbjct 20171 ATAGCATCTGGGCGAGGCTTTTCTACCAGCAGGGCGGGATACAGTTCCATGGCATCGATG 20112 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | | || ||||| || ||||| ||||||| Sbjct 20111 TCACTGTAGAGGGCTTTCAACTCTGCAGCCATTTCCTTCTCTCCTG 20066 Score = 107 bits (118), Expect = 3e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | |||||||| || || | | |||||||| || ||| | | Sbjct 16487 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCCGCTACCGGAGGAAGGGCCCTGGTG 16428 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||| |||||||| |||||||||||| ||| |||||| | | ||||| | Sbjct 16427 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCGTAGTGCACATTGTAAGTT 16368 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || ||||||||||||| ||||| |||| Sbjct 16367 GGTGGACTGTCAATCAAATGTGATCTGGCTGA 16336 Score = 89.7 bits (98), Expect = 7e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||| || || ||||||||| ||||| | || |||||| | ||| ||| | ||| Sbjct 17483 CTTACTCCGTGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAAA 17424 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 |||||||| ||||| || || | || || |||||||| | || | ||| ||||||||| Sbjct 17423 AACTGGTGAGTGAAGTGCTGAGCGAAGAATGCAAACATCATATTTGAGCCTTGGGGATCG 17364 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCA 9803 || |||| |||| |||||| ||||||| Sbjct 17363 GGGATGAACTCTCTCCTTAGAAGAACCTTTTCCA 17330 >seq4083 Length=792805 Score = 89.7 bits (98), Expect = 7e-13 Identities = 128/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| || ||||||||| ||| ||||| Sbjct 704041 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGCTGCTCGTCATCCCACGTGGGATGC 703982 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | ||||| | || ||||| | ||| || || | |||||||| |||| | | Sbjct 703981 TCCTCCTTCAGCAGGTCACACACGCGGTTATGCTCACGCAGCCAGATCGTGGAAATGAGC 703922 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 || ||||| || | || ||||| |||| || || || |||| || ||||||||| Sbjct 703921 ATCAGCCCTGGGAGCAACCCAAACACCTCCTGGCCCACGGCCATCTGC---TTTTCGGGC 703865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711861986916160