Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq15872 253 2e-62 seq15962 242 4e-59 seq3369 210 2e-49 seq2418 93.3 4e-14 >seq15872 Length=96178 Score = 253 bits (280), Expect = 2e-62 Identities = 566/839 (67%), Gaps = 13/839 (2%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || |||| || | || || || |||||||| || || || ||||| || |||||| Sbjct 39937 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGAAATGTTCTCC 39996 Query 16736 ATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 ||||| ||||| ||||| || |||||| || | | ||||| || || | Sbjct 39997 ATGAAGTCAAATGGATTCTCTACTCTGAAAGCCTTGCTAA--AACCCAGCTCCAGCATAA 40054 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 || || || ||||| || || || || |||||| ||| ||||| || ||||| Sbjct 40055 GCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAATTCATGCCAATAAGCT 40114 Query 16854 GTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA-TA 16912 || || | || ||||| | || || || || ||| || | |||| | | Sbjct 40115 TCACTGGCAAGGCCTCCGTGAGGAACTCCTGTTCAATCCTAACAGCATTGATAATTACTT 40174 Query 16913 CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAA 16972 || | ||| | ||| ||||| ||||| || ||||| |||||||| || || || Sbjct 40175 CTTTTA-CTCTCTGCTCCAACGGTTTATGTAGCAGGTGTTTGAACATCAGGCAGGCAAAG 40233 Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 || || ||||| ||||| | ||||| ||||| || || ||||| || | ||| |||||| Sbjct 40234 TCACAGTGTAAGCCCTCACCCCTGCTAATAAGCTCATTGGAAAACGTGAGCCCTGGCATC 40293 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 |||||||||||| | ||| ||||| | || || || ||||||||||| || | || Sbjct 40294 AGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTTCTTCC 40353 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTC 17152 || | ||||| || | | | ||| | || || || ||||||| | |||||| | Sbjct 40354 ACAGCGGCAAAGGCTGT-AGCCTTTCTCCATAGGTGGCCTCTTTGTCCCCAATCCAACGC 40412 Query 17153 TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAAT--T 17210 |||| || || || | ||| | ||| ||| |||| ||||| || || || | Sbjct 40413 AAGGCCCAGTCTGCCTTCTTCTTCACACAAGACATTGTTTAAATGGCATTGAAGAAAAAT 40472 Query 17211 TCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 || |||| || | || || | || || || || || || || ||||||||||| || Sbjct 40473 TCCCTTT---CTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAA 40529 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACT 17329 |||| ||| |||||||| || || ||||| || || || ||||||| | ||||| ||| Sbjct 40530 TGTACGTTTTCCATGGCAATTTGTAATCCATAGAAACAGTGGGCTTCTGTAATTTGCACT 40589 Query 17330 TCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAAC 17389 || | ||||| ||| | | |||||| ||||| ||||| || || || || || || Sbjct 40590 TCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTGGCTGCAAAGAAA 40649 Query 17390 GCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAA 17449 || | | ||| ||||| ||| | || ||||| | || | ||||| || | Sbjct 40650 GCAAGAACATGAGATATGAAGTATCTCTCCTCCGGCTTCAGCAGCTCCCAGTGCTGGATG 40709 Query 17450 TCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACAT 17508 || ||||| | |||||| || || | ||||| || |||| | ||||| ||||| || Sbjct 40710 TCCTTGGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCGGCCTTCTTATATAT 40768 >seq15962 Length=33107 Score = 242 bits (268), Expect = 4e-59 Identities = 570/851 (67%), Gaps = 22/851 (3%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| | || || |||| || | || || || |||||||| || || || ||| Sbjct 15251 ACTCCCATCCGCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGA 15310 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 || || ||||||||||| ||||| ||||| || ||||||| || | | |||| Sbjct 15311 GAAATGTTCTCCATGAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAA--AACCCA 15368 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 | || || | || || || ||||| || || || || |||||| ||| |||| Sbjct 15369 GCTCCAGCATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAATTCA 15428 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || ||||| || || | || |||| | | || || || ||| || | Sbjct 15429 TGCCAATAAGCTTCACGGGCAAGGCCTCCGGGAGGGACTCCTGTTCAATCCTAACAGCAT 15488 Query 16902 CCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCA 16961 |||| || |||| | ||| ||||| ||||| || ||||| ||||||| Sbjct 15489 TGATAATTATTTCTTTTACTCTCTGCTCCCACGGTTTATGTAACAGGTGTTTGAACATCA 15548 Query 16962 GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCA 17021 | || | || || || ||||| ||||| || ||||| ||||| || || ||||| || | Sbjct 15549 GGCAGGAAAAGTCACAGTGTAAGCCCTCATCCCTGCTAATAAGCTCATTGGAAAACGTGA 15608 Query 17022 ACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGA 17081 ||| ||||| |||||||||||| | ||| ||||| | || || || |||||||||| Sbjct 15609 GCCCTGGCATTAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGA 15668 Query 17082 ATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTAC 17141 | || || || | || ||||| || | ||| | || || || ||||||| | Sbjct 15669 AGATTCCTTCCAAGGCGGCAAAGGC-------CTTTCTCCATAGGTGGCCTCTTTGTCCC 15721 Query 17142 GAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCT 17201 |||||| | |||| || || || | ||| | ||| ||| |||| ||||| | Sbjct 15722 CAATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGGCATTGTTTAAATGGCAT 15781 Query 17202 T--AAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGT 17258 | | | || ||| |||| || | || || | || || || || || || || |||| Sbjct 15782 TGAAGAGAAATTCCCTTT---CTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGT 15838 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 ||||||| || |||||||| |||||||| || || || || || || || |||||||| | Sbjct 15839 ACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG 15898 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 ||||| ||||| | ||||| ||| | | |||||| ||||| ||||| || || | Sbjct 15899 TAATTTGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTAG 15958 Query 17379 CGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGG-TGTAAGAACGCGC 17437 | || || || || | | ||| ||||| ||| | || ||||| | || | | | Sbjct 15959 CTGCAAAGAAAGCGAGAACATGAGATATGAAGTATCTCTCCTCCGGCTTCAACAGCTC-T 16017 Query 17438 CAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCC 17497 |||| || | || ||||| | |||||| || || | ||||| || |||| | ||| Sbjct 16018 CAGTGCTGGATGTCCTTGGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCGGCC 16077 Query 17498 TTTTTATACAT 17508 |||||||| Sbjct 16078 ---TTATACAT 16085 >seq3369 Length=196643 Score = 210 bits (232), Expect = 2e-49 Identities = 554/830 (67%), Gaps = 18/830 (2%) Strand=Plus/Minus Query 16700 AAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAG-TAG- 16757 || |||||||| || || || ||||| || ||||||||||| ||||| ||||| || Sbjct 92181 AAGAAGTTAGTCTTCCCTTCCAGAGAAATGTTCTCCATGAAGTCAAATGGATTCTCTACT 92122 Query 16758 CTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATAT 16817 ||||||| || | | ||||| || || | || || || ||||| || || | Sbjct 92121 CTGAAAACCTTGCTAA--AACCCAGCTCCAGCATAAGCCTGTCTGCCACAAACTCAATGT 92064 Query 16818 ATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT-ACCGGAAGAGCTTCCGTCAAA 16876 | || |||||| ||||||||| | |||| || | || || | || ||||| | Sbjct 92063 ACTGCTTCATTAAAGTGCAGTTCATGTCAATAA-ACTTCACTGGCAAGGCCTCCGTGAGG 92005 Query 16877 AATCGTTGCTCTATAACAACCGCTTCCTTAATAA-TACTAGCAACTCGTTCCTCGGACGG 16935 | || || || ||| || | |||| | | || | ||| | ||| |||| Sbjct 92004 AGCTCCTGTTCCATCCTAACAGCATTGATAATTACTTCTTTTA-CTCTCTGCTCCGACGT 91946 Query 16936 TGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCT 16995 | |||| || ||| | |||||||| || || || || || ||||| ||||| ||||| Sbjct 91945 T-TATGGAGCAGGTGTCTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCT 91887 Query 16996 GCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAA 17055 | | ||||| || || ||||| || | ||| |||||| || ||||||||| | ||| || Sbjct 91886 GATAATAAGCTCATTGGAAAACGTAAGCCCTGGCATCAGTCTTCGTTTCTTGAGCCAGAA 91827 Query 17056 TATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCG 17115 ||| | || || || || |||||||| | || || | || ||||| || | | || Sbjct 91826 TATTGACGCAAAAGAACCGGAAAAGAAGAGTCCTTCCAGGGCGGCAAAGGCTACAACACG 91767 Query 17116 TTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTT 17175 ||| | || || || ||||| | |||||| | |||| || || || | ||| Sbjct 91766 TTCTCCATAGGTGGCC-CTTTGCCCCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTT 91708 Query 17176 TATGCAATCCATCGTTTCTATGGCCTTAAATA--ATTTCTCTTTTTCCTGTAGG-TCGAT 17232 | ||| ||| || || ||||| || || | | ||| |||| || | || || | Sbjct 91707 CACACAAGGCATTGTCTCAATGGCATTGAAGAGAAATTCCCTTT---CTTTGGGATCTTT 91651 Query 17233 TATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTG 17292 || || || || || || || ||||||||||| || |||||||| |||||||| || || Sbjct 91650 AATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTG 91591 Query 17293 AAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAG 17352 || || | || || ||| |||| | ||||| ||||| | ||||| ||| | Sbjct 91590 GAAGCCACAGAAACAGCGGACTTCTGTAATTTGCACTTCTTGGCTAAATCGCTCCACCCA 91531 Query 17353 ATTTTCGTTCACGATGCCGTCGCTCGCGGCGA--AAAACGCCAATATATGCTTAATGAAA 17410 |||||| ||||| | ||| || || || || | ||| || || ||| ||||| Sbjct 91530 ATTTTCATTCACTAGGCCATCACTGGCTGCAAAGAAAGCGAGAACGGATGAGCTATGAAG 91471 Query 17411 TATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 ||| | || ||||| | || || || | || | || ||||| | |||||| || Sbjct 91470 TATCTCTCCTCCGGCTTCAGCACCTCCCGGGGCTGGATGTCCTTGGAAAGATCCACCTCC 91411 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATC 17520 || | ||||| | |||| | ||||| |||||||| | ||| ||||| Sbjct 91410 TCAGCTGTCCAGAGGGAAGCCTCGGCCTTCTTATACATCTGCCAGATATC 91361 >seq2418 Length=977819 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| || ||||| ||||| || || ||||| || | ||| |||||| ||||||||||| Sbjct 180827 CCTCATCCCTGCTAATAAGCTCATTGGAAAACGTGAGCCCTGGCATCAGTCCTCGTTTCT 180886 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || |||| ||||| | Sbjct 180887 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCGGCAAAGG 180946 Query 17106 C 17106 | Sbjct 180947 C 180947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517408728596760