Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq15872 250 3e-61 seq15962 230 2e-55 seq3369 194 2e-44 seq2418 93.3 4e-14 seq2406 89.7 5e-13 >seq15872 Length=96178 Score = 250 bits (276), Expect = 3e-61 Identities = 553/820 (67%), Gaps = 11/820 (1%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 || || ||||||||||| || || || | ||| || || ||||| || ||||| ||||| Sbjct 39955 TTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGAAATGTTCTCCATGAAGTCAAATGGATTC 40014 Query 15992 G-TAG-CTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATT 16049 || |||||| ||| | ||||| ||| | | || ||||| ||||| | Sbjct 40015 TCTACTCTGAAAGC--CTTGCTAAAACCCAGCTCCAGCATAAGCCTGTCTGCCACAAACT 40072 Query 16050 CTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTG 16109 | || || || |||||| |||||| || || ||||| || || | || | | Sbjct 40073 CAATGTACTGCTTCATTAAAGTGCAATTCATGCCAATAAGCTTCACTGGCAAGGCCTCCG 40132 Query 16110 TTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCG-TGTTTCA 16168 | | || | ||||| ||| ||| || | |||| | || | ||| || | || Sbjct 40133 TGAGGAACTCCTGTTCAATCCTAACAGCATTGATAATTACTTCTTTTACTCTCTGCTCCA 40192 Query 16169 GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228 ||||| |||| |||||||| ||||| || || || ||||| || |||| || || Sbjct 40193 -ACGGTTTATGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCA 40251 Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAAC 16288 | ||||| ||||| || |||||||| || | ||||||||| |||||||||||| | | Sbjct 40252 CCCCTGCTAATAAGCTCATTGGAAAACGTGAGCCCTGGCATCAGTCCTCGTTTCTTGAGC 40311 Query 16289 CAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATT 16348 |||||||| | ||||| || || |||||||| || | || |||| ||||| || | Sbjct 40312 CAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTTCTTCCACAGCGGCAAAGGC-TGT 40370 Query 16349 AATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTT 16408 | | ||| | || || || ||||| | | |||||| | |||| || || || Sbjct 40371 AGCCTTTCTCCATAGGTGGCCTCTTTGTCCCCAATCCAACGCAAGGCCCAGTCTGCCTTC 40430 Query 16409 TGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCG 16468 | || | |||| ||| |||| ||||| || || || || |||| | ||| Sbjct 40431 TTCTTCACACAAGACATTGTTTAAATGGCATTGAAGAAAAATTCCCTTTCTTTGGGATCT 40490 Query 16469 ATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATC 16528 | || || || ||||| || | |||||||||||| || |||| ||| || ||||| || Sbjct 40491 TTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAATGTACGTTTTCCATGGCAATT 40550 Query 16529 TGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 || ||||||||||| || | || || | ||||| ||||| | |||||| ||| || Sbjct 40551 TGTAATCCATAGAAACAGTGGGCTTCTGTAATTTGCACTTCTTGGCTAAATCGCTCCACC 40610 Query 16589 AGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGC--CAATATGTGCTTAATGA 16646 | || |||||||| || || ||||| || ||||| || || || ||| | | |||| Sbjct 40611 AAATTTTCATTCACTATGCCATCACTGGCTGCAAAGAAAGCAAGAACATGAGAT--ATGA 40668 Query 16647 AATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTT 16706 | ||| | || || | | || | | ||| | | | || ||||| | |||||| | Sbjct 40669 AGTATCTCTCCTCCGGCTTCAGCAGCTCCCAGTGCTGGATGTCCTTGGAAAGATCCACCT 40728 Query 16707 CTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACAT 16746 | || | ||||| ||| |||| | ||||| ||||| || Sbjct 40729 CCTCAGCTGTCCAGAAGGAAGCCTCGGCCTTCTTATATAT 40768 >seq15962 Length=33107 Score = 230 bits (254), Expect = 2e-55 Identities = 475/702 (68%), Gaps = 15/702 (2%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 || || ||||||||||| || || || | ||| || || ||||| || ||||| ||||| Sbjct 15281 TTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGAAATGTTCTCCATGAAGTCAAATGGATTC 15340 Query 15992 G-TAG-CTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATT 16049 || ||||||| ||| | ||||| ||| | | || ||||| ||||| | Sbjct 15341 TCTACTCTGAAAAC--CTTGCTAAAACCCAGCTCCAGCATAAGCCTGTCTGCCACAAACT 15398 Query 16050 CTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTG 16109 | || || || |||||| |||||| || || ||||| || || | || | | Sbjct 15399 CAATGTACTGCTTCATTAAAGTGCAATTCATGCCAATAAGCTTCACGGGCAAGGCCTCCG 15458 Query 16110 TTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAG 16169 | | | ||||| ||| ||| || | |||| || || | ||| || Sbjct 15459 GGAGGGACTCCTGTTCAATCCTAACAGCATTGATAATTATTTCTTTTACTCTCTGCTCCC 15518 Query 16170 ACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGT 16229 ||||| |||| |||||||| ||||| || || | ||||| || |||| || || | Sbjct 15519 ACGGTTTATGTAACAGGTGTTTGAACATCAGGCAGGAAAAGTCACAGTGTAAGCCCTCAT 15578 Query 16230 CTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACC 16289 | ||||| ||||| || |||||||| || | |||||||||| |||||||||||| | || Sbjct 15579 CCCTGCTAATAAGCTCATTGGAAAACGTGAGCCCTGGCATTAGTCCTCGTTTCTTGAGCC 15638 Query 16290 AGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTA 16349 ||||||| | ||||| || || |||||||| || || || | | ||||| || Sbjct 15639 AGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAAGGCGGCAAAGGC----- 15693 Query 16350 ATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTT 16409 | ||| | || || || ||||| | | |||||| | |||| || || || | Sbjct 15694 --CTTTCTCCATAGGTGGCCTCTTTGTCCCCAATCCAACGCAAGGCCCAGTCTGCCTTCT 15751 Query 16410 GTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATC 16467 || | |||| ||| |||| ||||| || | | || ||| | |||| | ||| Sbjct 15752 TCTTCACACAAGGCATTGTTTAAATGGCATTGAAGAGAAATTCCC--TTTCTTTGGGATC 15809 Query 16468 GATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTAT 16527 | || || || ||||| || | |||||||||||| || |||||||| || ||||| || Sbjct 15810 TTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAAT 15869 Query 16528 CTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGC 16587 || || |||||||| || || || || | ||||| ||||| | |||||| ||| | Sbjct 15870 TTGGAAGCCATAGAAACAGCGGGCTTCTGTAATTTGCACTTCTTGGCTAAATCGCTCCAC 15929 Query 16588 CAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGC 16629 || || |||||||| || || ||||| || ||||| || || Sbjct 15930 CAAATTTTCATTCACTATGCCATCACTAGCTGCAAAGAAAGC 15971 >seq3369 Length=196643 Score = 194 bits (214), Expect = 2e-44 Identities = 546/829 (66%), Gaps = 16/829 (2%) Strand=Plus/Minus Query 15938 AAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAG-TAG- 15995 ||||||||||| || || || | ||| || || ||||| || ||||| ||||| || Sbjct 92181 AAGAAGTTAGTCTTCCCTTCCAGAGAAATGTTCTCCATGAAGTCAAATGGATTCTCTACT 92122 Query 15996 CTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATAT 16055 ||||||| ||| | ||||| ||| | | || ||||| ||||| || || | Sbjct 92121 CTGAAAAC--CTTGCTAAAACCCAGCTCCAGCATAAGCCTGTCTGCCACAAACTCAATGT 92064 Query 16056 ATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAA 16115 | || |||||| ||| || || | |||| || || | || | || | | Sbjct 92063 ACTGCTTCATTAAAGTGCAGTTCATGTCAATAAACTTCACTGGCAAGGCCTCCGTGAGGA 92004 Query 16116 ATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTG 16175 | ||||| ||| ||| || | |||| | || | ||| || |||| | Sbjct 92003 GCTCCTGTTCCATCCTAACAGCATTGATAATTACTTCTTTTACTCTCTGCTCCGACGTT- 91945 Query 16176 TATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGC 16235 ||||| |||||| | ||||| || || || ||||| || |||| || || |||||| Sbjct 91944 TATGGAGCAGGTGTCTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGA 91885 Query 16236 TGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATA 16295 | ||||| || |||||||| || | ||||||||| || ||||||||| | |||||||| Sbjct 91884 TAATAAGCTCATTGGAAAACGTAAGCCCTGGCATCAGTCTTCGTTTCTTGAGCCAGAATA 91825 Query 16296 TCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTT 16355 | | ||||| || || |||||||| | || || | | ||||| || | | |||| Sbjct 91824 TTGACGCAAAAGAACCGGAAAAGAAGAGTCCTTCCAGGGCGGCAAAGGCTACAACACGTT 91765 Query 16356 CCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTA 16415 | | || || || |||| | |||||| | |||| || || || | || | Sbjct 91764 CTCCATAGGTGGCC-CTTTGCCCCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCA 91706 Query 16416 TACAATCCATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTAT 16473 |||| ||| || || ||||| || || | | ||| |||| | | || | | || Sbjct 91705 CACAAGGCATTGTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGGATCTTTA--AT 91648 Query 16474 ATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAA 16533 || || ||||| || | |||||||||||| || |||||||| || ||||| || || || Sbjct 91647 GTAAGTGTCAATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAA 91588 Query 16534 TCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTT 16593 ||| |||| || || | || | ||||| ||||| | |||||| ||| || || Sbjct 91587 GCCACAGAAACAGCGGACTTCTGTAATTTGCACTTCTTGGCTAAATCGCTCCACCCAATT 91528 Query 16594 CTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA----ATATGTGCTTAATGAAAT 16649 |||||||| | || ||||| || ||||| || || | ||| ||| ||||| | Sbjct 91527 TTCATTCACTAGGCCATCACTGGCTGCAAAGAAAGCGAGAACGGATGAGCT--ATGAAGT 91470 Query 16650 ATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTT 16709 || | || || | | || | | || | | || ||||| | |||||| || | Sbjct 91469 ATCTCTCCTCCGGCTTCAGCACCTCCCGGGGCTGGATGTCCTTGGAAAGATCCACCTCCT 91410 Query 16710 CTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATC 16758 | | ||||| | | |||| | ||||| |||||||| | ||| ||||| Sbjct 91409 CAGCTGTCCAGAGGGAAGCCTCGGCCTTCTTATACATCTGCCAGATATC 91361 >seq2418 Length=977819 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || || ||||| ||||| || |||||||| || | ||||||||| |||||||||||| Sbjct 180829 TCATCCCTGCTAATAAGCTCATTGGAAAACGTGAGCCCTGGCATCAGTCCTCGTTTCTTG 180888 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || || || | ||||| || Sbjct 180889 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCGGCAAAGGC 180947 >seq2406 Length=770489 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| || || |||||||| || | || ||||| |||| |||| Sbjct 395250 CTTCATCTCTGCTGATGAGCTCATTGGAAAAGGTGAGTCCAGGCATGAGACCTCTCTTCT 395191 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| | || || |||| ||||| | Sbjct 395190 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 395131 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 395130 CCACCACTCTTTCC 395117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511279150069240