Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq7191 221 1e-52 seq3663 95.1 1e-14 >seq7191 Length=127218 Score = 221 bits (244), Expect = 1e-52 Identities = 326/459 (71%), Gaps = 2/459 (0%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || ||||| ||||| | || |||||||||||||| ||||||||||| || || ||||| Sbjct 41649 GGAGACCTGGGCCCAGTCTATGGCTTCCAGTGGAGGCATTTTGGAGCAGACTACAAAGA- 41591 Query 18849 TGTCAAT-CAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 | | ||| || | || | | |||||| | || |||||||||| || || || || || Sbjct 41590 TATGAATTCAGATTACTCAGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCAT 41531 Query 18908 TAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCC 18967 ||||| ||||| || | || |||| || || | | ||||| ||||| ||| | || Sbjct 41530 CAAAACCAACCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAAAGATCTTCC 41471 Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATT 19027 || |||| || ||||| || || | | || ||||| || || | ||| | ||| | Sbjct 41470 TTTGATGGCGCTGCCTCCCTGCCATGCTCTCTGCCAGTTCTATGTGGTGAACAGAGAACT 41411 Query 19028 ATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGC 19087 |||||||| |||||||| | || || || ||||| || || ||||| ||||||||||| Sbjct 41410 GTCCTGCCAGCTATACCAGCGGTCAGGAGACATGGGTCTGGGTGTACCCTTCAACATTGC 41351 Query 19088 TGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTT 19147 | ||||| || || |||||||| | || || | ||||| || | | || || || Sbjct 41350 CAGCTATGCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGCAGCCAGGTGACTT 41291 Query 19148 AATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCA 19207 | ||||| |||| ||||||||||||||| ||||||| || || | | ||| || Sbjct 41290 TGTACATACTTTGGGAGATGCACATATTTACCTGAATCACATTGAGCCACTGAAAACCCA 41231 Query 19208 GCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAAT 19246 ||| ||| |||| |||||| ||| || ||||| Sbjct 41230 GCTTCAGCGAGAACCAAGACCTTTCCCTAAGCTCAAAAT 41192 >seq3663 Length=525456 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| | || || |||| || ||||| || || | | || ||||| || || | ||| Sbjct 215540 GATCTTCCTTTGATGGCGCTGCCTCCCTGCCATGCTCTCTGCCAGTTCTATGTGGTGAAC 215599 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || ||| | |||||||| |||||||| | || || || ||||| || || ||||| ||| Sbjct 215600 GGGGAACTGTCCTGCCAGCTATACCAGCGGTCAGGAGACATGGGTCTGGGTGTACCCTTC 215659 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACAT 19111 |||||||| | ||||| || || |||||||| Sbjct 215660 AACATTGCCAGCTATGCTCTGCTCACCTACAT 215691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399400987519065