Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2209 253 1e-62 seq323 232 5e-56 seq7191 223 2e-53 seq18421 159 3e-34 seq1357 127 1e-24 seq3663 86.0 5e-12 >seq2209 Length=254265 Score = 253 bits (280), Expect = 1e-62 Identities = 393/555 (71%), Gaps = 11/555 (2%) Strand=Plus/Minus Query 3971 AATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAG 4030 ||| |||||| ||||||||| |||||||||||||||| | || ||||| || || | | Sbjct 211806 AATCATTCTTTTCATATACTGCAAATTTGTACTTAATGCCTTCTTCTTCCTGGACTTCAA 211747 Query 4031 AAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGG---AA 4087 |||||| || | | |||| || | | || ||| |||| | |||| |||||| || Sbjct 211746 AAAGAAAACCTAGGTATTTTAGGAGTAACTTTTATATCTCCACATCAGTTTCTGGGGAAA 211687 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| |||||||| ||||| || ||||||| | |||||||| |||||| | | || Sbjct 211686 AAAATGTGTCACAGTCAAACCCT-GCATGATTTTTGTCACAAATAGTTTAGG----CCTG 211632 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATC-CAGACCATGTCTACT 4206 | | || ||| |||| || || |||||||| ||||| | |||| || ||||||| | | Sbjct 211631 GCTGAC-CATGACTTCCTTTTAAACAGAACTGCCTCCCACTATCGCATGCCATGTCCAAT 211573 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 ||| ||| | |||||| || || |||||||||| ||||||| | ||| | || | | Sbjct 211572 TTACTTGGTTATTCTGACTTCTCAATAAGTTTTAAGACATCATCCAGACTTTGGGCAAGA 211513 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 ||| |||| | | ||| | ||||| ||||| | ||||||| | ||||||||| | Sbjct 211512 AAA-GAGCCCCTTAGGGAGGTTCCTTGAGTTCTCTACTGAGAATTATATTAATTCTATCC 211454 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 ||||||| | ||||||||||| || ||||| ||||| |||||||||||| ||| Sbjct 211453 CTTAAAGGTTGACAATTCTCAGGAATAGAAAACCAGGTCTTGCTACCCATAATCATCAAA 211394 Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 |||| ||| || || ||||| || | || || | ||| || ||||||||| Sbjct 211393 TTCTCTTTGCCTTCTATTGAAGAAGTTGAGGTGGTTTATGAGAAGAACTTGAAATCATTC 211334 Query 4447 ATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCA 4506 | || || | || | | ||| ||||| |||||| ||| || | ||| | Sbjct 211333 CTCAGAAGGGGTTAGGGGAGGCCACCACTCTTGCCTTTGCCCACGTTCTGGAATTCAGTA 211274 Query 4507 ACAATGCAGTTTAGT 4521 || |||| ||||||| Sbjct 211273 ACCATGCTGTTTAGT 211259 >seq323 Length=269588 Score = 232 bits (256), Expect = 5e-56 Identities = 191/233 (82%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| ||||| ||||||||||| |||||||||||||| | ||| || || || || Sbjct 164814 TATTAATCCTTCTTTTCATATACTTCCAATTTGTACTTAATGCCTTTTTCCTCCTGGACC 164755 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | ||||||||||| ||| |||||| | |||||||||||| || | ||||| || |||| Sbjct 164754 TCAGAAAGAACACCTGGGTATTCTGGGAGAAGTTTGTATTTTTCCAAATCAATTTTTGGA 164695 Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 ||||||||||||| |||||| || ||||||||||| || ||||| |||||||||| || | Sbjct 164694 AAAAAGGTGTCACTTTCAAATTCCTGCATGATCCTTGTTACAAATAGTTTAAGATGGCCT 164635 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCAT 4199 || | | |||| ||||| ||||| ||||| || ||||| | |||||| ||||| Sbjct 164634 GGCTGATTCATGGCTTCCTTATAAACAGAGCTGCCTCCTACTATCCAAACCAT 164582 >seq7191 Length=127218 Score = 223 bits (246), Expect = 2e-53 Identities = 468/691 (68%), Gaps = 5/691 (1%) Strand=Plus/Plus Query 101582 AATAT-AATGTCATCTGCTTTAAAGTCATCAATGCATGAAACATTTC-TAGCAAATCTAA 101639 ||||| || ||| || || | ||||||||||| ||| |||| ||| | | | | Sbjct 41140 AATATGAAAGTCTTCAACTCTGAAGTCATCAATTGTCTCAACCTTTCATAGGATTT-TGA 41198 Query 101640 GTGTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTA 101699 | | || || ||||| || |||| | ||| |||| || | |||||||||| | Sbjct 41199 GCTTAGGGAAAGGTCTTGGTTCTCGCTGAAGCTGGGTTTTCAGTGGCTCAATGTGATTCA 41258 Query 101700 CATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACAT 101759 || || || |||||||| | |||||| | ||| || || ||| || |||| | Sbjct 41259 GGTAAATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTGCAGGCCTGTGATGT 41318 Query 101760 GAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCA 101819 | ||||||||| | || | |||| |||||| |||||||| || || || || | |||| Sbjct 41319 GTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGTACACCCAGACCCA 41378 Query 101820 TATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGA 101878 | || |||| | || || || || ||||| || | || | ||| ||||| || || Sbjct 41379 TGTCTCCTGACCGCTGGTATAGCTGGCAGGACAGTTCTCTGTTCACC-ACATAGAACTGG 41437 Query 101879 CTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACAC 101938 | | |||| || || |||| | |||| ||||| ||| ||||| |||||| Sbjct 41438 CAGAGAGCATGGCAGGGAGGCAGCGCCATCAAAGGAAGATCTTTTGGGTTCCAGGCACAC 41497 Query 101939 ATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGG 101998 || | || ||||| || |||||| ||||| || || ||||||| | || | ||| Sbjct 41498 ATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGG 41557 Query 101999 TCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTC 102058 || ||||||| ||| ||||| | | |||| || |||||||| ||||||||| Sbjct 41558 TCTACTCCTTGACCTGAGTAATCTGAATTCATATCTTTGTAGTCTGCTCCAAAATGCCTC 41617 Query 102059 CACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTA 102118 ||||| || ||||| || || || || |||||||| | || | | |||| || || | Sbjct 41618 CACTGGAAGCCATAGACTGGGCCCAGGTCTCCTTCTTGTCGGGCGGAAAATCCCAGGCTG 41677 Query 102119 TCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCT 102178 || ||||| || |||||||| |||||||| || | ||| || | || || || Sbjct 41678 TCCAAAAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCC 41737 Query 102179 TTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAAT 102238 || | || ||||| |||||||||||| ||| || || | ||| || |||| ||| Sbjct 41738 TTAGCATTTGTGGATCCCTTGATAAACCACAGCAGCTCCTCCAAAACTCCCTTCCAGAAT 41797 Query 102239 ACTCTCTTAGTAGTTAAAAGTGGAAATTCAT 102269 || | || || | | || |||||||||| Sbjct 41798 ACACGTTTGGTTATAAGCAGAGGAAATTCAT 41828 >seq18421 Length=204791 Score = 159 bits (176), Expect = 3e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAA 27011 |||||||| || || || |||||||| |||| ||| ||||||||||| || | || || Sbjct 102689 ACAATGGGGGTGACACAGGTGCAGCCCACAGCCACCAGCATCTTCTCCAGTCGGAAGGAG 102748 Query 27012 TTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAG 27071 | |||||| ||| | | | |||| || || |||||||| ||||| ||||| ||| Sbjct 102749 GTGGGGCAGTTCTGAGACTCCCTCCGCAGGACCAGGATCTCTTGCTGGATGGGGACAGAG 102808 Query 27072 TTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCT 27131 |||||||||| ||| || ||||||||||| | | || || | || ||| || ||||| Sbjct 102809 TTCATGTGGTGGTCCACCTTCCCATCAGCTGTGATGCAGCCCAGGTGGCGGCAGTTTGCC 102868 Query 27132 TCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||||| ||||||||||||||||| || | || || ||||| Sbjct 102869 TCCCAGATCACAGAGGGATATCTCTCAGGGTCCTCGTTGCG 102909 >seq1357 Length=219996 Score = 127 bits (140), Expect = 1e-24 Identities = 93/108 (86%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||||||||| || | ||||| |||||||||||||||||||| |||||| || ||||| Sbjct 163823 AAGTTTGTATTTTTCCAAATCAATTTCTGGAAAAAAGGTGTCACTTTCAAATTCCTGCAT 163882 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTC 4163 |||||| |||||||| |||||||||| || ||| | | |||| ||||| Sbjct 163883 GATCCTTGTCACAAATAGTTTAAGATGGCCTGGCTGATTCATGGCTTC 163930 Score = 125 bits (138), Expect = 5e-24 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| |||||||||| || ||||||||||| Sbjct 173730 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCTTTTAAAGGTCGATTCTTCTCAGG 173789 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| ||||||||||| || ||||||||||||| | |||||||||| || Sbjct 173790 AATGGAGAACCAAGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 173838 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| ||||| || ||||| | |||||| |||||||| ||||||||||||||||||||| Sbjct 166398 TTATAAACAGAGCTGCCTCCTACTATCCAAACCATGTCCACTTTATTTGCTAATTCTGGC 166457 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | || |||||||||| ||||||| ||||| | || | ||||||||||| |||||| Sbjct 166458 TCCTCAATAAGTTTTAAGGCATCATTCAAACTTTGGGCAAGAAAATGAGCTCCTTGTGGA 166517 Query 4285 AGCTCC 4290 | ||| Sbjct 166518 GGTTCC 166523 Score = 89.7 bits (98), Expect = 4e-13 Identities = 74/89 (83%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| ||||| |||||||||||||||||||||||||| | ||| || || || || Sbjct 157473 TATTAATCCTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACC 157532 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAA 4055 | ||||||||||| ||| || ||||| || Sbjct 157533 TCAGAAAGAACACCTGGGTA-TCTATAAA 157560 >seq3663 Length=525456 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| || |||||||| |||||||||||||| || ||||| || || || || ||||||| Sbjct 211965 CTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAGACTGGGCCCAGGTCTCCTT 211906 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | | || | | |||| || || | || | ||| || |||||||| |||||||| | Sbjct 211905 CTTGTCGGGCGGAAAATCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCATCCCAGA 211846 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 211845 TTTTCACTCC 211836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361158051039407