Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq7191 257 2e-63 seq2511 242 4e-59 seq3663 159 4e-34 seq1391 129 7e-25 >seq7191 Length=127218 Score = 257 bits (284), Expect = 2e-63 Identities = 470/684 (69%), Gaps = 12/684 (2%) Strand=Plus/Plus Query 145590 AAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCT-GG 145648 |||||| || | ||||||||||| || ||| ||| | ||||| ||||| | || Sbjct 41146 AAAGTCTTCAACTCTGAAGTCATCAATTGTCTCAACCTTTCATAGGATTTTGAGCTTAGG 41205 Query 145649 GAAAGGGCCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAG 145707 |||||| | || ||| ||| |||||| ||||| ||||| | ||| || ||||| Sbjct 41206 GAAAGGTCTTGGTTCTCGCTGA--AGCTGGGTTTTCAGTGGCTCAATGTGATTCAGGTAA 41263 Query 145708 ACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCG 145767 | || || || |||| || | ||||| || |||| ||||| |||| ||| || Sbjct 41264 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTGCAGGCCTGTGATGTGTGCA 41323 Query 145768 ACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCC 145827 | ||||||||| ||||| | |||||||| ||||||||||| || ||||| |||||||| Sbjct 41324 ATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGTACACCCAGACCCATGTCT 41383 Query 145828 CCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGG 145887 || || |||||||| ||||||||||| || || | | | |||| ||||||||||| || Sbjct 41384 CCTGACCGCTGGTATAGCTGGCAGGACAGTTCTCTGTTCACCACATAGAACTGGCAGAGA 41443 Query 145888 AGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACG 145947 |||||||| ||||| ||||| || || || ||||||||||| | || | Sbjct 41444 GCATGGCAGGGAGGCAGCGCCATCAAAGGAAGATCTTTTGGGTTCCAGGCACACATGATG 41503 Query 145948 AGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACG 146007 | || ||| || ||||| | ||||| | |||| | |||||||| || Sbjct 41504 ATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACT 41563 Query 146008 CCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGG 146067 || || || |||||||| || || ||| | || || || |||||||||||| Sbjct 41564 CCTTGACCTGAGTAATCTGAATTCATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGG 41623 Query 146068 AACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGG----C 146123 || || ||||| || |||||||| | || | ||| | | ||| || | Sbjct 41624 AAGCCATAGACTGGGCCCAGGTCTC----CTTCTTGTCGGGCGGAAAATCCCAGGCTGTC 41679 Query 146124 GAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATT 146183 | ||||| | ||| || ||||| |||||||| || || ||| | | || || || || Sbjct 41680 CAAAAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCCTT 41739 Query 146184 GGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGAC 146243 | | ||||| ||| |||| ||||| |||||||| || | || ||| ||||||| || Sbjct 41740 AGCATTTGTGGATCCCTTGATAAACCACAGCAGCTCCTCCAAAACTCCCTTCCAGAATAC 41799 Query 146244 CCTCTTGGTGGTCAGCAGGGGGAA 146267 | ||||| | ||||| || || Sbjct 41800 ACGTTTGGTTATAAGCAGAGGAAA 41823 >seq2511 Length=311798 Score = 242 bits (268), Expect = 4e-59 Identities = 605/904 (67%), Gaps = 21/904 (2%) Strand=Plus/Plus Query 9470 TACCCGCCCTGTATCTGCTTGTGTTTCTCT-TTGGGTTGTTGGGCAATATCTTAGTGGTG 9528 |||| ||| |||| || ||||| | || |||| | |||||||| | |||| ||| Sbjct 129799 TACCTGCCTTGTACTCCCTGGTGTT-CACTGTTGGCCTTTTGGGCAACGTGGTAGTCGTG 129857 Query 9529 ATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTG 9588 | || || || ||| | | | ||| || | ||||||| | ||| | |||||| Sbjct 129858 GTGATCCTCGCAAAATATAGAAGGCTCAGAATTATGGCTAACATCTATCTGCTCAACTTG 129917 Query 9589 GCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATG 9648 || || ||||||||||| || || || ||| | ||||| ||||| |||||| |||| | Sbjct 129918 GCGATTTCTGACTTGCTCTTCCTCTTCACTATTCCATTCTGGATTCACTATGTTGG---G 129974 Query 9649 TATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATG 9708 || | || |||| |||||| || | ||||||| | ||| || | | |||| || Sbjct 129975 CATAACGAGTGGATTTTTGGCCATTTCATGTGTAAGTTCCTCTCTGGGTTTTATTACCTG 130034 Query 9709 TCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTT 9768 | ||||| || |||||| |||| |||||| || | |||||||| || || || Sbjct 130035 GGTTTATACAGTGAGATCTTTTTTATCACCCTGCTGACCATTGACAGGTACCTGGCCATT 130094 Query 9769 GTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTG 9826 ||| | ||||| ||| || ||| | || || || | ||| | | ||| | Sbjct 130095 GTCCACGCTGTGTTTGCCCTTCGAGCCC--GGACTGTGACTTTTGGTGTCATCACCAGCA 130152 Query 9827 TATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACC 9886 | |||||| | ||||||||| || | |||||||||||||||| |||| | Sbjct 130153 TCACCACCTGGGTCCTGGCAGGGCTGGCAGCGCTCCCTGAATTTTTCTCCCATGAGTTGC 130212 Query 9887 AAGATGACAATGGTAGGGTTCAGTGTGAT--CCTTACTACCCAGA-GATGTCTACAAATG 9943 ||| ||| ||| || || | || || ||| ||||| || || | | | || Sbjct 130213 AAGGGGACTTTGG-AGAGT-CTGTCTGCAGCCCTCTTTACCCTGAAGACGAC-ATGGATA 130269 Query 9944 TTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCA 10003 |||| | |||| | | ||| ||| || |||| | | |||||| || Sbjct 130270 AATGGAAACATTTTCACGCTCTGAGAATGAATATCTTGGGTCTTGCTCTCCCTCTGGTCG 130329 Query 10004 TTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGA 10063 |||||||||||||||||| | ||| |||| || ||| |||| |||||| || || | Sbjct 130330 TTATGGCTGTCTGCTACTCAGGAATCATCAAAACGCTGCTGAGATGCCCCAATAAAAAAA 130389 Query 10064 AGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACAC 10123 || ||||||| ||| | ||||| |||||||||||||||| | ||| | || ||||| | Sbjct 130390 AGAACAAGGCTATCCGACTCATTTTTGTCATCATGGTGGTATTTTTCATCTTCTGGACTC 130449 Query 10124 CCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTT---AACCTGCAGT 10180 | |||||| | ||| |||| || ||| | ||||| | |||||| | | | || Sbjct 130450 CTTACAACCTGGTTATCCTTCTCTCTGCTTTTCA-AAGAGTCTTCTTGGACAACAACTGT 130508 Query 10181 GTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACAC 10240 | ||| || || | ||||| | || ||| | | ||| | | |||||||| | Sbjct 130509 GAGCA--GAACAAACAGCTGGACGTAGCCATGCAGGTGACAGAGGTCATCGCCTACACCC 130566 Query 10241 ACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGT 10300 |||| ||| ||||||| || ||||| || || || || ||| ||| | | | ||||| Sbjct 130567 ACTGCTGCGTCAACCCCGTCATCTATGCCTTTGTTGGTGAGCGGTTCCGGAAATACCTGC 130626 Query 10301 ACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTG 10360 |||||| ||||| | | ||||||||| | | |||| ||||||| ||||| ||| Sbjct 130627 GCCACTTTTTCCAGAGGCATGTGGCCATCCATGTGGGCAAACACATCCCATTCCTTCCTG 130686 Query 10361 GTGA 10364 |||| Sbjct 130687 GTGA 130690 Score = 242 bits (268), Expect = 4e-59 Identities = 605/904 (67%), Gaps = 21/904 (2%) Strand=Plus/Plus Query 176356 TACCCGCCCTGTATCTGCTTGTGTTTCTCT-TTGGGTTGTTGGGCAATATCTTAGTGGTG 176414 |||| ||| |||| || ||||| | || |||| | |||||||| | |||| ||| Sbjct 129799 TACCTGCCTTGTACTCCCTGGTGTT-CACTGTTGGCCTTTTGGGCAACGTGGTAGTCGTG 129857 Query 176415 ATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTG 176474 | || || || ||| | | | ||| || | ||||||| | ||| | |||||| Sbjct 129858 GTGATCCTCGCAAAATATAGAAGGCTCAGAATTATGGCTAACATCTATCTGCTCAACTTG 129917 Query 176475 GCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATG 176534 || || ||||||||||| || || || ||| | ||||| ||||| |||||| |||| | Sbjct 129918 GCGATTTCTGACTTGCTCTTCCTCTTCACTATTCCATTCTGGATTCACTATGTTGG---G 129974 Query 176535 TATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATG 176594 || | || |||| |||||| || | ||||||| | ||| || | | |||| || Sbjct 129975 CATAACGAGTGGATTTTTGGCCATTTCATGTGTAAGTTCCTCTCTGGGTTTTATTACCTG 130034 Query 176595 TCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTT 176654 | ||||| || |||||| |||| |||||| || | |||||||| || || || Sbjct 130035 GGTTTATACAGTGAGATCTTTTTTATCACCCTGCTGACCATTGACAGGTACCTGGCCATT 130094 Query 176655 GTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTG 176712 ||| | ||||| ||| || ||| | || || || | ||| | | ||| | Sbjct 130095 GTCCACGCTGTGTTTGCCCTTCGAGCCC--GGACTGTGACTTTTGGTGTCATCACCAGCA 130152 Query 176713 TATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACC 176772 | |||||| | ||||||||| || | |||||||||||||||| |||| | Sbjct 130153 TCACCACCTGGGTCCTGGCAGGGCTGGCAGCGCTCCCTGAATTTTTCTCCCATGAGTTGC 130212 Query 176773 AAGATGACAATGGTAGGGTTCAGTGTGAT--CCTTACTACCCAGA-GATGTCTACAAATG 176829 ||| ||| ||| || || | || || ||| ||||| || || | | | || Sbjct 130213 AAGGGGACTTTGG-AGAGT-CTGTCTGCAGCCCTCTTTACCCTGAAGACGAC-ATGGATA 130269 Query 176830 TTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCA 176889 |||| | |||| | | ||| ||| || |||| | | |||||| || Sbjct 130270 AATGGAAACATTTTCACGCTCTGAGAATGAATATCTTGGGTCTTGCTCTCCCTCTGGTCG 130329 Query 176890 TTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGA 176949 |||||||||||||||||| | ||| |||| || ||| |||| |||||| || || | Sbjct 130330 TTATGGCTGTCTGCTACTCAGGAATCATCAAAACGCTGCTGAGATGCCCCAATAAAAAAA 130389 Query 176950 AGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACAC 177009 || ||||||| ||| | ||||| |||||||||||||||| | ||| | || ||||| | Sbjct 130390 AGAACAAGGCTATCCGACTCATTTTTGTCATCATGGTGGTATTTTTCATCTTCTGGACTC 130449 Query 177010 CCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTT---AACCTGCAGT 177066 | |||||| | ||| |||| || ||| | ||||| | |||||| | | | || Sbjct 130450 CTTACAACCTGGTTATCCTTCTCTCTGCTTTTCA-AAGAGTCTTCTTGGACAACAACTGT 130508 Query 177067 GTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACAC 177126 | ||| || || | ||||| | || ||| | | ||| | | |||||||| | Sbjct 130509 GAGCA--GAACAAACAGCTGGACGTAGCCATGCAGGTGACAGAGGTCATCGCCTACACCC 130566 Query 177127 ACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGT 177186 |||| ||| ||||||| || ||||| || || || || ||| ||| | | | ||||| Sbjct 130567 ACTGCTGCGTCAACCCCGTCATCTATGCCTTTGTTGGTGAGCGGTTCCGGAAATACCTGC 130626 Query 177187 ACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTG 177246 |||||| ||||| | | ||||||||| | | |||| ||||||| ||||| ||| Sbjct 130627 GCCACTTTTTCCAGAGGCATGTGGCCATCCATGTGGGCAAACACATCCCATTCCTTCCTG 130686 Query 177247 GTGA 177250 |||| Sbjct 130687 GTGA 130690 Score = 109 bits (120), Expect = 6e-19 Identities = 193/277 (70%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 10067 ACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCT 10126 ||||||| | ||||||||||| | ||||||| | | ||| ||| |||| ||| | |||| Sbjct 203988 ACAAGGCTGTGAGGCTCATCTTCGCCATCATGATCGTCTACTTTCTTTTCTGGGCTCCCT 204047 Query 10127 ACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCT--GCAG-TGTG 10183 ||||||| || ||||| ||| | ||||| || | | | || || ||| | || |||| Sbjct 204048 ACAACATCGTGCTCCTCCTGACCACCTTCCA-GGAGCTCT--TTGGCCTGAGTAGCTGTG 204104 Query 10184 CATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACT 10243 |||||| || ||||| ||| ||| | | ||| | || | | ||||||| Sbjct 204105 AGAGAAGCAGTCACCTGGACCAGGCCATGCAGGTGACAGAGACTCTTGGGATGACACACT 204164 Query 10244 GTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACC 10303 |||| |||||||| | ||||| || || || ||||||||||| |||| | || | Sbjct 204165 GTTGTATCAACCCCATCATCTATGCCTTTGTCGGGGAGAAGTTCCGAAGGTATCTCTCTG 204224 Query 10304 ACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAA 10340 |||||| | | ||||||| |||||||||| Sbjct 204225 TGTTCTTCAGAAAGCATGTGGCCAAACACCTCTGCAA 204261 Score = 109 bits (120), Expect = 6e-19 Identities = 193/277 (70%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 176953 ACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCT 177012 ||||||| | ||||||||||| | ||||||| | | ||| ||| |||| ||| | |||| Sbjct 203988 ACAAGGCTGTGAGGCTCATCTTCGCCATCATGATCGTCTACTTTCTTTTCTGGGCTCCCT 204047 Query 177013 ACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCT--GCAG-TGTG 177069 ||||||| || ||||| ||| | ||||| || | | | || || ||| | || |||| Sbjct 204048 ACAACATCGTGCTCCTCCTGACCACCTTCCA-GGAGCTCT--TTGGCCTGAGTAGCTGTG 204104 Query 177070 CATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACT 177129 |||||| || ||||| ||| ||| | | ||| | || | | ||||||| Sbjct 204105 AGAGAAGCAGTCACCTGGACCAGGCCATGCAGGTGACAGAGACTCTTGGGATGACACACT 204164 Query 177130 GTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACC 177189 |||| |||||||| | ||||| || || || ||||||||||| |||| | || | Sbjct 204165 GTTGTATCAACCCCATCATCTATGCCTTTGTCGGGGAGAAGTTCCGAAGGTATCTCTCTG 204224 Query 177190 ACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAA 177226 |||||| | | ||||||| |||||||||| Sbjct 204225 TGTTCTTCAGAAAGCATGTGGCCAAACACCTCTGCAA 204261 >seq3663 Length=525456 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | ||||||||| ||||| | |||||||| ||||||||||| Sbjct 215712 AGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGT 215653 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||| || || |||||||| ||||||||||| || |||||| | || Sbjct 215652 ACACCCAGACCCATGTCTCCTGACCGCTGGTATAGCTGGCAGGACAGTTCCCCGTTCACC 215593 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| || |||||||| ||||| ||||| Sbjct 215592 ACATAGAACTGGCAGAGAGCATGGCAGGGAGGCAGCGCCAT 215552 >seq1391 Length=362727 Score = 129 bits (142), Expect = 7e-25 Identities = 123/157 (78%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| ||| || || |||||| || ||| |||||||||||||||| || || Sbjct 152565 CAGCGCCGCAGTTGCAGCCGGAGGGTCTTCAGCCTTTCCCCCAGGGAGTTTAC---ATGG 152621 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 | | ||| | || ||| |||| ||||| |||||||| ||| |||||||||||||| Sbjct 152622 GTCTGGATGTCTGGGCCATGGGTCTCCGCCTGAGGCATCACATCCACCAGGTAAAACTGG 152681 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| ||||||||||||| Sbjct 152682 ATCATCTCTGACAAGGCTTGGCAACCCAGGTAACCCT 152718 Score = 118 bits (130), Expect = 1e-21 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 137924 AGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGC 137983 ||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||||| | Sbjct 150369 AGTTTTTTATCTTCGTTGTCATGTAAGCTTCTATGTAGTTGATGAAGATGTCAAACTCAC 150428 Query 137984 TCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 ||||||| |||||||| ||||| || ||||||| Sbjct 150429 TCATGGCTTTGTAGACGCCTTTCTCGTGGAGCT 150461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589920746814280