Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq2814 264 1e-65 seq1709 123 3e-23 >seq2814 Length=92294 Score = 264 bits (292), Expect = 1e-65 Identities = 263/341 (77%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 83053 GGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCT 83112 ||| |||||||| || ||||| |||| | | | |||| || |||| ||||||| | Sbjct 9406 GGGCAGCAGGGCTTCAATGTCAGGCTGGATATCGATGGTCGGGAAGCGACGGCTGTAGCG 9347 Query 83113 GCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTT 83172 |||||| ||| ||||||| ||||||| ||||||||| |||||||||| | |||||| Sbjct 9346 GCGCACTGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGAAATGTCGTT 9287 Query 83173 GCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTC 83232 ||||||||| ||||||||| || | || ||||||| | | || || | |||||| Sbjct 9286 GCGGCACACCGGAGACCAGATGATTAACTTGGGGTCGGTTATGAACGCAGTGGGGTCGTC 9227 Query 83233 GCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTT 83292 ||| ||| ||||||||||||| || |||||||||||||| ||||| ||| |||||| || Sbjct 9226 GCTGGGCACCGGCAGGGCCTCCCGCAGGAAGGCGAAGAGTGGATGCGCCTGTGCACCATT 9167 Query 83293 GACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTG 83352 || |||||||||||||| || | ||||| |||||||| ||| ||||| ||||| | Sbjct 9166 CACTTCGCACTTCTCGAACAGTGTGAAGTTGGGCTCGAACCCGCCACCAGGTCGGACATA 9107 Query 83353 CTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 ||| |||||| || ||||| | |||| |||||| |||| Sbjct 9106 CTTGAGGGAATTCAGAATCTCTTCGTTCTCGGCGTTCTCCT 9066 Score = 158 bits (174), Expect = 1e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || || || ||||| |||| | || |||| Sbjct 8811 CCTGATGTCCAAACTGGTTGCACGGGAAGCCGAGTACGACCAGGCCCCTGGGCCCGAGGC 8752 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||| |||||||||||||||||| || || |||||| | ||| | |||||||||||||| | Sbjct 8751 GCCTCTGCAGCTCGTTCATCTGCGTATAGTCCCGGGCGGTGGTGCCTCAGAGGGACGCCA 8692 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||| | | | |||| | | ||| || | || | || Sbjct 8691 CATTCTCGATGAGCAGCACCTTGCCCTGCAGGGAGCCCAGGTTCAAGGGCTTCCCGCAGG 8632 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAG 83600 | | |||| || ||||||| |||||||| Sbjct 8631 CCAGCCGGCGCGCCGAGAAGGTGTACACAG 8602 >seq1709 Length=1146037 Score = 123 bits (136), Expect = 3e-23 Identities = 195/271 (72%), Gaps = 14/271 (5%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACGGCGCAAGCAG---GTCTATCTACAACTTCGCTGTGCGTAT 50466 ||| ||||||| || |||| |||||| ||| ||| ||||||||| ||| | Sbjct 93344 GCAGCTGCGCAGCATCTACGA---AAGCAGCCTGTCCATCGGCAACTTCGCGTCGCGCCT 93288 Query 50467 GCTCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTG 50526 ||||||| || | || || |||||||| || || ||||||| || ||| | |||||| Sbjct 93287 GCTCGTGCACCTCTTCCCCGAGCTCTTCACCCACGAAAACCTGCGCAAGCAGTACAACTG 93228 Query 50527 CTACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACT 50585 | |||||| |||||||| |||| || ||||| ||| | ||| | |||| |||| Sbjct 93227 CAGCGGCTCGCTGGGCAAGAAGCAG-CTGGACCCCGCCCGCATCCGCCTCATCCGCCACT 93169 Query 50586 ATGTGCAGTTGCTGCACCCGGCGGCGCGCAA--CGAGCGCGTGTGGATCACAA-AGTTCC 50642 | |||||| |||| |||| | |||| || ||| || || |||| ||| ||||| Sbjct 93168 ACGTGCAGCTGCTCTACCC--CCGCGCCAAAAACGACCGTGTCTGGA-CACTGGAGTTCG 93112 Query 50643 TGGCGTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||| ||||||||||||||||||||||| Sbjct 93111 TGGGCAAGCTGGACGAGCGCTGCCGGCGCCG 93081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608635796076280