Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq7191 217 1e-51 seq3663 82.4 5e-11 >seq7191 Length=127218 Score = 217 bits (240), Expect = 1e-51 Identities = 424/624 (68%), Gaps = 2/624 (0%) Strand=Plus/Plus Query 97009 GGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAA 97068 |||||||| || || |||| |||||| | | || | ||||||||||||| ||| Sbjct 41204 GGGAAAGGTCTTGGTTCTCGCTGAAGCTGGGTTTTCAGTGGCTCAATGTGATTCAGGTAA 41263 Query 97069 ATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCG 97128 || || |||||||| ||||| || | ||| || || || | | |||| || || Sbjct 41264 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTGCAGGCCTGTGATGTGTGCA 41323 Query 97129 ATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCA 97188 ||||| | || | |||| |||||| |||||||| || || || || || ||||| || Sbjct 41324 ATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGTACACCCAGACCCATGTCT 41383 Query 97189 GCTGATCTTTGATATAACTGACAGGAAAGCTTTC-CATCACACACATAAAACTGACTCAA 97247 |||| | || |||| ||| ||||| || | || |||| |||||| ||||| | | Sbjct 41384 CCTGACCGCTGGTATAGCTGGCAGGACAGTTCTCTGTTCAC-CACATAGAACTGGCAGAG 41442 Query 97248 TACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAA 97307 |||| ||||| |||| |||||| |||| |||| ||||| |||||||| | Sbjct 41443 AGCATGGCAGGGAGGCAGCGCCATCAAAGGAAGATCTTTTGGGTTCCAGGCACACATGAT 41502 Query 97308 CATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAAC 97367 |||||||| || ||||| || | ||||| | ||| | | | | || || || Sbjct 41503 GATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTAC 41562 Query 97368 GCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTG 97427 |||| || |||| || | | ||| || |||||||||||||||||||| || Sbjct 41563 TCCTTGACCTGAGTAATCTGAATTCATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTG 41622 Query 97428 GAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAA 97487 ||| ||||| || || || ||||||||||||| || | | || || || | || || Sbjct 41623 GAAGCCATAGACTGGGCCCAGGTCTCCTTCTTGTCGGGCGGAAAATCCCAGGCTGTCCAA 41682 Query 97488 ATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCT 97547 | || | |||||||| |||||||| || | ||| || | | || || || Sbjct 41683 AAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCCTTAGC 41742 Query 97548 GTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCT 97607 | || ||||| |||||||||||| || || |||| ||| || |||| ||||| | Sbjct 41743 ATTTGTGGATCCCTTGATAAACCACAGCAGCTCCTCCAAAACTCCCTTCCAGAATACACG 41802 Query 97608 CTTAGTTGTTAAGAGAGGAAAATC 97631 || ||| | | |||||||| || Sbjct 41803 TTTGGTTATAAGCAGAGGAAATTC 41826 >seq3663 Length=525456 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || |||||||||||||||||||| ||||| ||||| || || || ||||||||||||| | Sbjct 211960 TAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAGACTGGGCCCAGGTCTCCTTCTTGT 211901 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 | | | || || || | || | | || | |||||||| |||||||| || | | Sbjct 211900 CGGGCGGAAAATCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 211841 Query 97522 ACACC 97526 || || Sbjct 211840 ACTCC 211836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346694581420490