Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3495 100 2e-16 seq304 100 2e-16 seq1696 84.2 2e-11 >seq3495 Length=1667739 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || |||||||| || |||||||| || | ||||| ||| || Sbjct 879032 ACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 879091 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| || || || Sbjct 879092 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 879151 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| |||||| || ||| || || | ||| | || ||| Sbjct 879152 ATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 879211 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || || || ||||||||| Sbjct 879212 CCGGTCAGGGTCTTCACGAAGATCTGCATG 879241 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || || ||||| || |||||||| || | ||||| ||| || Sbjct 879259 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 879318 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| || || || Sbjct 879319 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 879378 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| |||||| || ||| || || | ||| | || ||| Sbjct 879379 ATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 879438 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || || || ||||||||| Sbjct 879439 CCGGTCAGGGTCTTCACGAAGATCTGCATG 879468 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || || ||||| || |||||||| || | ||||| ||| || Sbjct 878804 ACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 878863 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| || || || Sbjct 878864 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 878923 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| |||||| || ||| || || | ||| | || ||| Sbjct 878924 ATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 878983 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || || || ||||||||| Sbjct 878984 CCGGTCAGGGTCTTCACGAAGATCTGCATG 879013 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || || ||||| || || ||||| || | ||||| ||| || Sbjct 879487 ACCAGGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGGCCATCTTCC 879546 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| || || || Sbjct 879547 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 879606 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| |||||| || ||| || || | ||| | || ||| Sbjct 879607 ATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 879666 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 879667 CCGGTCAGGGTCTTCACGAAGATCTGCAT 879695 >seq304 Length=872862 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || |||||||| || |||||||| || | ||||| ||| || Sbjct 181957 ACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 181898 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| || || || Sbjct 181897 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 181838 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| |||||| || ||| || || | ||| | || ||| Sbjct 181837 ATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 181778 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || || || ||||||||| Sbjct 181777 CCGGTCAGGGTCTTCACGAAGATCTGCATG 181748 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || |||||||| || |||||||| || | ||||| ||| || Sbjct 181501 ACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 181442 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| || || || Sbjct 181441 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 181382 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| |||||| || ||| || || | ||| | || ||| Sbjct 181381 ATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 181322 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 181321 CCGGTCAGGGTCTTCACGAAGATCTGCAT 181293 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || || ||||| || |||||||| || | ||||| ||| || Sbjct 181729 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 181670 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| || || || Sbjct 181669 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 181610 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| |||||| || ||| || || | ||| | || ||| Sbjct 181609 ATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 181550 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || || || ||||||||| Sbjct 181549 CCGGTCAGGGTCTTCACGAAGATCTGCATG 181520 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || || ||||| || |||||||| || | ||||| ||| || Sbjct 182184 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 182125 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| || || || Sbjct 182124 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 182065 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| |||||| || ||| || || | ||| | || ||| Sbjct 182064 ATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 182005 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || || || ||||||||| Sbjct 182004 CCGGTCAGGGTCTTCACGAAGATCTGCATG 181975 >seq1696 Length=1012329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 118515 CCGCGTAATCTCAACACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCAT 118573 || || | ||||||| ||||| || | || ||||| |||||||||||||| || | Sbjct 926844 CCACGAAGTCTCAAC-CCAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCTGATAA 926902 Query 118574 AGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 ||| || ||| || || || || ||||| |||| || | |||||||| ||||| || Sbjct 926903 AGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCCGGAGGAAT 926962 Query 118634 GCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTC 118693 || ||||| || || || || || | ||| | || |||| | ||| ||||| Sbjct 926963 TCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTATCCGAGGGCTCAACCTC 927022 Query 118694 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || || || || ||||| ||||||||||| Sbjct 927023 AAGCGTGGTGGTCTTCCCAGTAAGGGTGTTTACGAAAATCTGCAT 927067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433718536424644