Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq15125 98.7 1e-15 seq3106 95.1 2e-14 seq1134 95.1 2e-14 seq9485 93.3 6e-14 seq1696 91.5 2e-13 seq1660 89.7 8e-13 seq944 84.2 3e-11 >seq15125 Length=584520 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||||| || | ||| | || || || || | || || || ||||| Sbjct 492570 CCACCACAAAGTCTTATCACAAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCTGAC 492511 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| |||||| Sbjct 492510 AAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 492451 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 492450 ATTCCTTCCTTATCTTG 492434 >seq3106 Length=183861 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| || || |||| |||| ||||||| | |||| || ||| ||| | || | Sbjct 112036 TTCCTTCTGGGTGCTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 112095 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || |||||||||||||||||||| || || ||| | | Sbjct 112096 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTATACTGT 112155 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 | ||| | || || | ||| | |||| | || ||| |||| |||| | || | Sbjct 112156 TCAATTTTGGCAAAGAGAAATTTGAAGTAAAAAAGGGTGATCGAATTGCTCAGCTCATTT 112215 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| ||||| ||||| |||| Sbjct 112216 GTGAACGGATTTTTTATCCAGAAAT 112240 >seq1134 Length=343165 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| || || |||| |||| ||||||| | |||| || ||| ||| | || | Sbjct 35443 TTCCTTCTGGGTGCTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 35384 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | |||| |||||||| || || || |||||||||||||||||| | || || ||| | | Sbjct 35383 TAGATACAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATATTGGTGTTATACTGT 35324 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | || || | ||| | |||| | || ||| |||| |||| | || | Sbjct 35323 TTAATTTTGGCAAAGAGAAATTTGAAGTAAAAAAGGGTGATCGAATTGCTCAGCTCATTT 35264 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| ||||| ||||| |||| Sbjct 35263 GTGAACGGATTTTTTATCCAGAAAT 35239 >seq9485 Length=81507 Score = 93.3 bits (102), Expect = 6e-14 Identities = 145/206 (70%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| || || |||| |||| ||||||| | |||| || ||| ||| | || | Sbjct 710 TTCCTTCTGGGTGCTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 769 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || |||||||||||| ||||||| || || ||| | | Sbjct 770 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAAGAAATGTTGGTGTTATACTGT 829 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | || || | |||| | |||| | || ||| ||| ||||| | || | Sbjct 830 TTAATTTTGGCAAAGAGAAATTTAAAGTAAAAAAGGGTGATCCAATTGCTCAACTCATTT 889 Query 10609 GTGAA-AAAATTTTATATCCTAAAAT 10633 ||||| | |||| ||||| |||| Sbjct 890 GTGAACGGATTTTTTTATCCAGAAAT 915 >seq1696 Length=1012329 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 146052 CACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAA 146110 |||| | |||||| || | | ||| | || || || ||| || || || || ||||| Sbjct 926842 CACCACGAAGTCTCAACCCAAGATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTCTGAT 926900 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| |||| ||||||||||||||||||| Sbjct 926901 AAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCCGGAGGA 926960 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 926961 ATTCCTTCCTTATCCTG 926977 >seq1660 Length=831338 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| |||||| || || | ||| | || || || ||| || || | || ||||| Sbjct 181701 CCACCAGGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGA-ATGGTGTAGTCTGA 181643 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||||||||| Sbjct 181642 CAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCCGGAGG 181583 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 181582 AATTCCTTCCTTATCCTG 181565 >seq944 Length=800573 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | || | || ||| || || || || ||||| Sbjct 497765 CCACCACAAAGTCTCAACACAAGATGAAGGGTGAACTCCTTTTGA-ATGTTCTAGTCTGA 497707 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 497706 CAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 497647 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||| || ||||| || Sbjct 497646 AATTCCGTCCTTATCCTG 497629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743329765149440