Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq15962 244 1e-59 seq15872 244 1e-59 seq2418 107 2e-18 seq2406 98.7 9e-16 >seq15962 Length=33107 Score = 244 bits (270), Expect = 1e-59 Identities = 504/743 (68%), Gaps = 19/743 (3%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| ||| ||| ||||| || | |||||||| |||||||| || || || ||| Sbjct 15245 GACATCACTCCCATCCGCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 15304 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC-- 16046 || | ||||| || ||||| || ||||| ||||| | | || | | | | || Sbjct 15305 TCCAGAGAAATGTTCTCCATGAAGTCAAATGGATTCTCT--ACTCT-GAAAACCTTGCTA 15361 Query 16047 -ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | |||| |||| || | || || |||||||| || || ||||| ||||||||| Sbjct 15362 AAACCCAGCTCCAGCATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTG 15421 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 || ||||| || || | || || || | || || | | | | | ||| || || Sbjct 15422 CAATTCATGCCAATAAGCTTCACGGGCAAGGCCTCCGGGAGGGACTCCTGTTCAATCCTA 15481 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTT 16224 || || | || ||||| ||| ||||| | || | |||| | ||| | |||||| Sbjct 15482 ACAGCATTGATAATTATTTCTTTTACT-CTCTGCTCCCACGGTTTATGTAACAGGTGTTT 15540 Query 16225 AAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGA 16284 ||||| | || | ||| ||||| || || || || ||||| || || | ||| || || Sbjct 15541 GAACATCAGGCAGGAAAAGTCACAGTGTAAGCCCTCATCCCTGCTAATAAGCTCATTGGA 15600 Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 ||| || || |||||||||||||||||||| || | ||| ||||| | ||||| ||||| Sbjct 15601 AAACGTGAGCCCTGGCATTAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACC 15660 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTA 16402 ||||||||| || ||||| | |||||||| || | || || || || || Sbjct 15661 AGAAAAGAAGATTCCTTCCAAGGCGGCAAAGGC-------CTTTCTCCATAGGTGGCCTC 15713 Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462 ||| | | | ||||| ||||| | ||| || | || ||||| ||| | Sbjct 15714 TTTGTCC--CCAATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGGCATTGTT 15771 Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 | || ||||| || | | | | |||||||| |||| ||| ||||| || || || Sbjct 15772 TAAATGGCATTGAAGAGAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGG 15831 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTA 16582 | ||| |||||||| ||||| || || ||||| || || || || ||||| || || | Sbjct 15832 AGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGG 15891 Query 16583 GCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCA 16642 ||||| | ||||| ||||| | ||| | || | || ||||| || ||||| ||| Sbjct 15892 GCTTCTGTAATTTGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCA 15951 Query 16643 TCGCTAGCTGCAAAAAACGCAAG 16665 || ||||||||||| || || || Sbjct 15952 TCACTAGCTGCAAAGAAAGCGAG 15974 >seq15872 Length=96178 Score = 244 bits (270), Expect = 1e-59 Identities = 504/741 (68%), Gaps = 9/741 (1%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| ||| ||| | ||||| || | |||||||| |||||||| || || || ||| Sbjct 39919 GACATCACTACCATCTGCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 39978 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA-ATAGTATTTATCGCA 16047 || | ||||| || ||||| || ||||| ||||| | | | | || || | | Sbjct 39979 TCCAGAGAAATGTTCTCCATGAAGTCAAATGGATTCTCTACTCTGAAAGCCTTGCTAAAA 40038 Query 16048 TCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107 |||| |||| || | || || |||||||| || || ||||| ||||||||| || Sbjct 40039 -CCCAGCTCCAGCATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCA 40097 Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 ||||| || || | || || || | || || || | || | | ||| || |||| Sbjct 40098 ATTCATGCCAATAAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGTTCAATCCTAAC 40157 Query 16168 CGCTTCAATGATTATATCTCTTACTACACTATTT-AACGGAGGGTTTAATAAGTGTTTAA 16226 || | || |||| ||| ||||| | || | ||||| | || | |||||| | Sbjct 40158 AGCATTGATAATTACTTCTTTTACT-CTCTGCTCCAACGGTTTATGTAGCAGGTGTTTGA 40216 Query 16227 ACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAA 16286 |||| | || ||||| ||||| || || || || |||| || || | ||| || |||| Sbjct 40217 ACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCACCCCTGCTAATAAGCTCATTGGAAA 40276 Query 16287 ATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG 16346 | || || |||||||| ||||||||||| || | ||| ||||| | ||||| ||||||| Sbjct 40277 ACGTGAGCCCTGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAG 40336 Query 16347 AAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtt 16404 ||||||| || |||| || |||||||| || | | || || || || || || Sbjct 40337 AAAAGAAGATTTCTTCCACAGCGGCAAAGGC-TGTAGCCTTTCTCCATAGGTGGCCTCTT 40395 Query 16405 tttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464 | | | | ||||| ||||| | ||| || | || ||||| ||| | | Sbjct 40396 TGTCC--CCAATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGACATTGTTTA 40453 Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAA 16524 || ||||| || ||| | | |||||||| |||| ||| ||||| || || || | Sbjct 40454 AATGGCATTGAAGAAAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAG 40513 Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGC 16584 ||| |||||||| ||||| | || ||||| || || || || ||||| || || || Sbjct 40514 ACTGTACATTTCAGAATGTACGTTTTCCATGGCAATTTGTAATCCATAGAAACAGTGGGC 40573 Query 16585 TTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644 ||| | ||||| ||||| | ||| | || | || ||||| || ||||| ||||| Sbjct 40574 TTCTGTAATTTGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATC 40633 Query 16645 GCTAGCTGCAAAAAACGCAAG 16665 || |||||||| || ||||| Sbjct 40634 ACTGGCTGCAAAGAAAGCAAG 40654 >seq2418 Length=977819 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || ||||| || || | ||| || ||||| || || |||||||| ||||||||||| || Sbjct 180829 TCATCCCTGCTAATAAGCTCATTGGAAAACGTGAGCCCTGGCATCAGTCCTCGTTTCTTG 180888 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| || |||||||| || Sbjct 180889 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCGGCAAAGGCT 180948 Query 16379 AC 16380 || Sbjct 180949 AC 180950 >seq2406 Length=770489 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || |||||| | | | | |||||||| | Sbjct 404590 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCCGCCATAACTGCAAAAC 404531 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| |||||||| ||||| |||| Sbjct 404530 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 404471 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 404470 CCATAAAATCAAAGGGATTTTCTG 404447 Score = 84.2 bits (92), Expect = 2e-11 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 16487 ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 ||||||| | |||| ||||||||||||||||| ||||||||||||||||| |||| | Sbjct 389346 TTTTCTTGGG-ATCTCTGATATAAGTATCTATTAGCAAACTATACATTTCTGAGTGAACA 389288 Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC 16587 ||||| || || ||||| ||||| || || | ||| || Sbjct 389287 TTCTCGATGAGAATTTGAAAGCCATAGAAACAGCGAGCCTC 389247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462389682920200