Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq2891 1420 0.0 seq2024 187 2e-42 >seq2891 Length=181477 Score = 1420 bits (1574), Expect = 0.0 Identities = 1301/1639 (79%), Gaps = 37/1639 (2%) Strand=Plus/Minus Query 107140 TCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCAC 107199 || |||||||| ||| |||| ||| ||||| | |||||| || | |||| |||||| Sbjct 111195 TCCTAGGCAGGTCTTTTCTGAAAATACTTGTCGAGAGAAGAAATATGTCTTG-CCATCAG 111137 Query 107200 TCTGGAGTTGAACTTGATGTT-CTGGA-------------TTAGTTTGTAATTAAAGGCA 107245 | |||| |||||||||| || |||| |||| |||||||| ||||| Sbjct 111136 TTTGGAATTGAACTTGACCTTTCTGGGAGCATGGTCATGGTTAGATTGTAATTGGAGGCA 111077 Query 107246 TTTTGTTCTGTCCAAGGA-TCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCTGATCT 107304 |||||||||||||||||| ||| || ||| | || ||| | ||| ||| ||| || Sbjct 111076 TTTTGTTCTGTCCAAGGAGTCTA-TCTTCCTCTTTTCCTCTATGAAAATTCTGATGACCT 111018 Query 107305 CCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGG 107364 ||||| |||| |||||| | ||||||| | || ||| || || |||| |||||| Sbjct 111017 CCCATTCCATAAAGATGATTCCATGGAAGAGG---CTCTGCTGGCGATATCACATGTGGG 110961 Query 107365 CCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAAT 107424 |||| ||||| |||||||| |||||| | ||| |||||||| |||| ||||| || || | Sbjct 110960 CCCTTGGCTGTTATATGCTTCTGGCCATCGTTGCTCTGAGAGTTTCTCTCAGATTGAAGT 110901 Query 107425 GTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACA 107484 ||||| | | |||||||||| | |||||| ||||| || ||| |||| | ||| | Sbjct 110900 GTGATTTTCAACATCTGGATCTGGACTTCAGGGAATTCCAAAGCCAGTACTGCAAGGATA 110841 Query 107485 TGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGC 107544 | |||||||| ||||||||||||| ||||||| | ||||||||||| ||| |||| | Sbjct 110840 TCTTGTACAAGTCCCTGAAGCTGCCAACAAAGAGGGCTATCAACTGTTCGGGGGTCACTC 110781 Query 107545 GAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGC 107604 |||||||||| || || || ||||||| | || || ||||||||||| ||||| |||| Sbjct 110780 GAGGGGACCAAGAGGCGGTCATCCAGGCTATACTGGATAACCTGGAAGTTAAGAAGAAGC 110721 Query 107605 GGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGG 107664 || |||| |||| | | | ||||||| | ||||| ||||||||||| ||| || | Sbjct 110720 GGGAGCCTTTCACAGATGCTGACTACCTCACCGGAACCAAAGACTGTGAGCACTTTAAAG 110661 Query 107665 CCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCT 107724 || |||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||| | Sbjct 110660 CCAAAAGGAAGTTCATACAATTCCCACTGAGCAAAGAAGAGACAGACTTCCCTATTGCAT 110601 Query 107725 ACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATG 107784 |||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 110600 ACTCTATGGTGGTTCATGAGAAGATTGAAAACTTTGAAAGGCTGCTGCGAGCTGTGTATG 110541 Query 107785 CCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGG 107844 |||||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||| || Sbjct 110540 CCCCTCAGAATATATACTGTGTCCATGTGGATGAGAAGTCCCCAGAAACTTTTAAAATGG 110481 Query 107845 CGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGG 107904 | || |||||||||| ||| |||||||| || |||||||| ||||||||| | || || | Sbjct 110480 CAGTAAAGGCCATTACTTCATGCTTCCCTAACGTCTTCATAGCCAGTAAGCTCGTTCCAG 110421 Query 107905 TGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCC 107964 |||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 110420 TGGTTTATGCTTCCTGGTCCAGGGTGCAGGCTGACCTGAACTGTATGGAAGACTTGCTCC 110361 Query 107965 AGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGA 108024 ||||| |||| |||||||| ||||| ||||||||||| |||||||| || || ||||||| Sbjct 110360 AGAGCCCAGTACCATGGAAATACTTCCTGAATACATGTGGGACAGATTTTCCTATAAAGA 110301 Query 108025 CCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG 108084 ||||||| |||||||||| |||||| ||| | ||||| || ||||||||||||||||| | Sbjct 110300 CCAATGCTGAGATGGTCCGGGCCCTAAAGCTATTGAATGGAAAGAACAGTATGGAGTCAG 110241 Query 108085 AGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACAC 108144 || |||| | |||| ||||||| ||||||||||| | ||||| ||||| ||| ||| Sbjct 110240 AGATACCCACCGAGTACAAAAAACTCCGCTGGAAATATCACTATGTGGTGAAAGATACAT 110181 Query 108145 TGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGA 108204 || | |||||||||| ||||||| |||||| ||||||| |||||||||| |||| Sbjct 110180 TGCATATCACCAGCAAGACAAAGGACCTTCCCCCATTTAATTTAACCATGTTCACTGGGA 110121 Query 108205 ATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCC 108264 ||||||| ||||||| ||| || ||| | ||||||||||| | || || ||||||| Sbjct 110120 ATGCCTACATTGTGGCTTCTAGAAACTTCATTGAACATGTCTTAAAGAATCCCAAATCCC 110061 Query 108265 AAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCC 108324 || |||| |||||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct 110060 AACAACTGATTGAATGGGTAAAAGACACCTATAGCCCAGATGAACACCTCTGGGCCACCC 110001 Query 108325 TTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAG 108384 |||| ||||| | |||||||||||||||||||| | ||| ||||||| ||||||||| Sbjct 110000 TTCATCGTGCCTCATGGATGCCTGGCTCTGTTCCCTTCAACCACAAGTATGACATCTCAG 109941 Query 108385 ACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGG 108444 ||||||||||||| |||||| | ||||||||||| |||| || ||||| |||| || Sbjct 109940 ACATGACTGCCATTGCCAGGTTGGTCAAGTGGCAAGACCATGAAGGAGACGTCAATGAGG 109881 Query 108445 GGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCG 108504 |||| |||||||||| |||||||| | || | | ||| ||||| ||||| || || | Sbjct 109880 GGGCATCTTATGCACCTTGCTCTGGGACTCACCAGCGGGGTATCTGTATTTATGGAGCTG 109821 Query 108505 GGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGG 108564 |||| || | ||||| || |||||||||||| | ||||| ||||||||||| || | || Sbjct 109820 GGGATGTGCATTGGATGCTTCAGAACCATCACTTGTTGGCCAACAAGTTTGATCCAAAGG 109761 Query 108565 TGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGA 108624 | |||||||| | || ||||||||||||||||| |||||| |||||||||||||||||| Sbjct 109760 TAGATGATAATGCACTTCAGTGCTTAGAAGAGTATCTACGTTATAAGGCCATCTATGGGA 109701 Query 108625 CTGAACTTTGAGCTGCACTG-------------TGGGCCAGGGAC-TGTGCCAACATGCC 108670 ||||| | |||| ||| | || | |||| || ||| | ||||| | Sbjct 109700 CTGAATTGTGAGACACACAGTTCTTGCTCCTCATGTGGCAGGAACATGTACACACATGAC 109641 Query 108671 CAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCC 108730 | | | |||| | ||| ||||||| ||| |||| | |||||||||| ||||| || Sbjct 109640 --AGACCTGCTGGGATAATGTAGGGTGGGAGACTAGGGTTCTGGAATCCATAGCATCTCC 109583 Query 108731 CAGG-GTCAGAGGGCTGCT 108748 ||| | || |||||||| Sbjct 109582 TAGGATTAAGGGGGCTGCT 109564 >seq2024 Length=170185 Score = 187 bits (206), Expect = 2e-42 Identities = 585/886 (66%), Gaps = 29/886 (3%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| | |||||| |||||||| || || ||||| ||| | ||| Sbjct 95166 CCCCTTAGTAAAGAAGAGGCGGGCTTCCCAATTGCCTATTCCATTGTGGTTCATCACAAG 95107 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | || | || ||||||||| | ||||| || Sbjct 95106 ATTGAAATGCTTGACAGGCTCCTGAGGGCTATCTACATGCCTCAGAACTTCTACTGCATC 95047 Query 107808 CACGTGGATGTGAAGTCCCCAGA-GACT--TTCAAAGAGGCGGTCAAGGCCATTATTTCC 107864 |||||||| || | |||| |||| || || ||||| | | ||| ||| Sbjct 95046 CACGTGGACAAAAAAT---CAGAGGACTCCTTTTTAGCAGCGGTGACTGGCATCGCGTCC 94990 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| || |||||| |||||||| |||||| ||||| || ||||||||| Sbjct 94989 TGTTTCAGTAACGTCTTCGTGGCCAGTCAGTTGGAGAGTGTGGTCTACGCCTCCTGGAGT 94930 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGC--CATGGA 107982 | || ||||||||||| ||||| ||| | ||| || | |||| | ||||| |||| Sbjct 94929 CGGGTCCAAGCTGACCTCAACTGCATGAAGGACCTG-TACAGA-ATGAGTGCAGACTGGA 94872 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||||||| | ||| || |||| || ||||| || || ||||| || |||||| Sbjct 94871 AGTACTTGATCAATCTTTGTGGGATGGATTTCCCTATTAAAACCAACCTGGACATGGTCA 94812 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTTCTGAGT 108099 | |||||| || | |||| | |||| |||| | | || | || || | Sbjct 94811 GGAAACTCAAGTCATTCATGGGTGAAAACAACCTGGAAACAGAGAAGATGCCATCCAA-- 94754 Query 108100 CCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGA-CA--GACACACTGTACCCTACCA 108156 || || | | |||||| | | ||||| || | || | | |||| | || Sbjct 94753 -TAAGGAAGACAGGTGGAAAAAGCATTATGAAGTCATCAATGGGAAACTGACCAACACAG 94695 Query 108157 GCAAGATGAAGGACCCTCCCC--CTGATAATTTACCCATGTTCACAGGGAATGCCTATTT 108214 | ||| || || | ||||| || | || | || | || |||| | ||||||||| Sbjct 94694 GGAAGGCCAAAGAGCGTCCCCCACTCAAAACT--CCTCTCTTTTCAGGCAGTGCCTATTT 94637 Query 108215 TGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACTGG 108273 ||||| | | ||| | ||| |||| |||| || || |||| |||| | Sbjct 94636 TGTGGTCAGTAGAGAATATGTGGGGTATGTGCTAGAAAATAAAAACATCCAAAAG-TTTA 94578 Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 | | |||| | ||||| || ||||| ||||| || ||||||||||| | || | | Sbjct 94577 TGGTGTGGGCACAGGACACATACAGCCCAGACGAGTACTTCTGGGCCACCATCCAAAG-G 94519 Query 108334 CTCCGTG-GATGCCTGGCTCTGT-TCCTAGCCACCCCAAGTATCACATCTCAGACATGAC 108391 ||| || | || ||||| | ||| | ||| ||||| || | || ||||||| Sbjct 94518 ATCCCTGACGTCCCGGGCTCACTGTCCGTG-AACCATAAGTACGACTTGTCTGACATGAA 94460 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 ||| |||| || | ||||||||||||||| ||||| || | || ||| || || Sbjct 94459 TGCAGTCGCTCGGTTTGTCAAGTGGCAGTACTTTGAGGGTGACATTTCCAAGGGTGCCCC 94400 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 ||| |||||||| || ||||| | | | | ||| ||| || || || ||| | Sbjct 94399 TTACCCACCCTGCAACGGGGTCCATGTGCGCTCAGTGTGCGTTTTTGGAGCTGGTGACTT 94340 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | ||||||| | | || |||||| | || || || ||||||||| Sbjct 94339 GAACTGGATGTTGCGCAAGCATCACTTTTTTGCCAATAAGTTTGAC 94294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348178998563418